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BaseInfo

ncRNA ID novel_jre_miR460
Species Juglans regia
Class miRNA
Genome position NW_017393213.1:12660-12861 [-]
Reference genome wgs.5d
Source SRR1170958;SRR1170969;SRR1170970;SRR1168795
Length 24
Mature sequence(if miRNA) 179 - GAAGAGAUAUGCUUAGCCAAAUGG - 202
Stem-loop(if miRNA) --G     A             A       A  C            A                              A    -UGAAUAG   CAAUACUU
   AAGAG UAUGCUUAGCCAA UGGUUAG CA UUCUCUUGGUGA GGGAGGGCAUUGGUUCGAGUCUCCUCAAUU UACU        GUG        C
   ||||| ||||||||||||| ||||||| || |||||||||||| |||||||||||||||||||||||||||||| ||||        |||        A
   UUCUC GUACGGAUCGGUU ACCAAUC GU GAGGGAACUACU CCCUCCUGUAACCAAGUUCAGGGGAGUUGA AUGA        CAC        A
UGG     C             A       C  U            A                              C    UGAAAAAA   UAAAUUAA
Stem-loop sequence GAAGAGAUAUGCUUAGCCAAAUGGUUAGACACUUCUCUUGGUGAAGGGAGGGCAUUGGUUCGAGUCUCCUCAAUUAUACUUGAAUAGGUGCAAUACUUCAAAAUUAAAUCACAAAAAAGUAGUACAGUUGAGGGGACUUGAACCAAUGUCCUCCCAUCAUCAAGGGAGUUGCCUAACCAAUUGGCUAGGCAUGCCUCUUGGU