Search result

BaseInfo

ncRNA ID	novel_jre_miR458
Species	Juglans regia
Class	miRNA
Genome position	NW_017395794.1:1967-2031 [+]
Reference genome	wgs.5d
Source	SRR1170957
Length	22
Mature sequence(if miRNA)	44 - UUUCCUUGGAGUGAUAGAGCUC - 65
Stem-loop(if miRNA)	--  -      GA UU U     -    G  CCU   GC CUGUUA  U  G GGAAG AGCU CU   U   || ||||||  |  | ||||| |||| ||   CG GAUAGU  A  U CCUUU UUGG GA   A CU  A      -G GG U     A    A  UAU
Stem-loop sequence	GCCUGUUAGAUUUGUGGAAGAGCUGCUCCUUAUAUAGAGGUUAUUUCCUUGGAGUGAUAGAGCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018983632.1	ncRNA:22   CUCGAGAUAGUGAGGUUCCUUU   1   **|=|||*|||||||||||||| targets:353   UUGUUCUCUCACUCCAAGGAAA   374 Target Full Sequence	2.0	PREDICTED: Juglans regia uncharacterized LOC109004933 (LOC109004933), partial mRNA	NA	coding protein	psRNATarget
XM_019004156.1	ncRNA:22   CUCGAGAUAGUGAGGUUCCUUU   1   **|=|||*|||||||||||||| targets:363   UUGUUCUCUCACUCCAAGGAAA   384 Target Full Sequence	2.0	PREDICTED: Juglans regia uncharacterized LOC109021511 (LOC109021511), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_019004154.1	ncRNA:22   CUCGAGAUAGUGAGGUUCCUUU   1   **|=|||*|||||||||||||| targets:357   UUGUUCUCUCACUCCAAGGAAA   378 Target Full Sequence	2.0	PREDICTED: Juglans regia uncharacterized LOC109021511 (LOC109021511), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019004155.1	ncRNA:22   CUCGAGAUAGUGAGGUUCCUUU   1   **|=|||*|||||||||||||| targets:358   UUGUUCUCUCACUCCAAGGAAA   379 Target Full Sequence	2.0	PREDICTED: Juglans regia uncharacterized LOC109021511 (LOC109021511), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019004153.1	ncRNA:22   CUCGAGAUAGUGAGGUUCCUUU   1   **|=|||*|||||||||||||| targets:357   UUGUUCUCUCACUCCAAGGAAA   378 Target Full Sequence	2.0	PREDICTED: Juglans regia uncharacterized LOC109021511 (LOC109021511), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018954571.1	ncRNA:22   CUCGAGAUAGUGAGGUUCCUUU   1   |||*|**||||||||||||||| targets:409   GAGAUAAAUCACUCCAAGGAAA   430 Target Full Sequence	3.0	PREDICTED: Juglans regia uncharacterized LOC108983047 (LOC108983047), mRNA	NA	coding protein	psRNATarget
XM_018997838.1	ncRNA:22   CUCGAGAUAGUGAGGUUCCUUU   1   |||*|**||||||||||||||| targets:471   GAGAUAAAUCACUCCAAGGAAA   492 Target Full Sequence	3.0	PREDICTED: Juglans regia uncharacterized LOC109015361 (LOC109015361), mRNA	NA	coding protein	psRNATarget