Search result

BaseInfo

ncRNA ID	novel_jre_miR457
Species	Juglans regia
Class	miRNA
Genome position	NW_017395491.1:571-688 [-]
Reference genome	wgs.5d
Source	SRR1170957;SRR1168796;SRR1168795
Length	24
Mature sequence(if miRNA)	1 - AAAGUGACUGCACGGCGUUUACGC - 24
Stem-loop(if miRNA)	-- C    AU                    AGUGAAUAAAU      CCCACACAA      A   G AAGC  CGUGCAGUCGCUUUGAAAAA           AUGGGA         AAAGAA U   | ||||  ||||||||||||||||||||           ||||||         |||||| U   C UUUG  GCACGUCAGUGAAACUUUUU           UAUCCU         UUUUUU A CG A    CG                    ---------CU      AGAUAAUAA      A
Stem-loop sequence	GCAAGCAUCGUGCAGUCGCUUUGAAAAAAGUGAAUAAAUAUGGGACCCACACAAAAAGAAAUUAAUUUUUUAAUAAUAGAUCCUAUUCUUUUUCAAAGUGACUGCACGGCGUUUACGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018964869.1	ncRNA:24   CGCAUUUGCGGCACGUCAGUGAAA   1   |||*||=||||||||||||=|||| targets:1075   GCGCAAGCGCCGUGCAGUCGCUUU   1098 Target Full Sequence	2.5	PREDICTED: Juglans regia histone-lysine N-methyltransferase ATXR2-like (LOC108990784), mRNA	NA	coding protein	psRNATarget
XM_018980788.1	ncRNA:24   CGCAUUUGCGGCACGUCAGUGAAA   1   |||*||=||||||||||||=|||| targets:1604   GCGCAAGCGCCGUGCAGUCGCUUU   1627 Target Full Sequence	2.5	PREDICTED: Juglans regia histone-lysine N-methyltransferase ATXR2-like (LOC109002870), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018980787.1	ncRNA:24   CGCAUUUGCGGCACGUCAGUGAAA   1   |||*||=||||||||||||=|||| targets:1677   GCGCAAGCGCCGUGCAGUCGCUUU   1700 Target Full Sequence	2.5	PREDICTED: Juglans regia histone-lysine N-methyltransferase ATXR2-like (LOC109002870), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018980786.1	ncRNA:24   CGCAUUUGCGGCACGUCAGUGAAA   1   |||*||=||||||||||||=|||| targets:1901   GCGCAAGCGCCGUGCAGUCGCUUU   1924 Target Full Sequence	2.5	PREDICTED: Juglans regia histone-lysine N-methyltransferase ATXR2-like (LOC109002870), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018952930.1	ncRNA:24   CGCAUUUGCGGCACGUCAGUGAAA   1   |=||||=||||*|||||||||||| targets:3179   GUGUAAGCGCCUUGCAGUCACUUU   3202 Target Full Sequence	2.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018952929.1	ncRNA:24   CGCAUUUGCGGCACGUCAGUGAAA   1   |=||||=||||*|||||||||||| targets:3182   GUGUAAGCGCCUUGCAGUCACUUU   3205 Target Full Sequence	2.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018969255.1	ncRNA:24   CGCAUUUGCGGCACGUCAGUGAAA   1   |||**|=|||||||||||||=||| targets:1910   GCGCCAGCGCCGUGCAGUCAUUUU   1933 Target Full Sequence	2.5	PREDICTED: Juglans regia CTP synthase-like (LOC108994151), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018994468.1	ncRNA:24   CGCAUUUGCGGCACGUCAGUGAAA   1   |||*||==*||||||||||||||| targets:1448   GCGCAAGUACCGUGCAGUCACUUU   1471 Target Full Sequence	3.0	PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC109012694), transcript variant X6, mRNA	NA	coding protein	psRNATarget