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BaseInfo

ncRNA ID novel_jre_miR451
Species Juglans regia
Class miRNA
Genome position NW_017389666.1:627180-627301 [+]
Reference genome wgs.5d
Source SRR1170957
Length 24
Mature sequence(if miRNA) 99 - GUGUGAGAAUGAAUAGUGACUGAU - 122
Stem-loop(if miRNA) --              CAC              AUUAAAAAAAAC   UAUAUCUUAUAGAA
  CAGUUAUUAUUUAU   CUCACACUCUACAC            UCU              A
  ||||||||||||||   ||||||||||||||            |||              A
  GUCAGUGAUAAGUA   GAGUGUGAGGUGUG            AGU              C
UA              --A              -AAUAUUAAAAA   AUUCUAUACUCUCA
Stem-loop sequence CAGUUAUUAUUUAUCACCUCACACUCUACACAUUAAAAAAAACUCUUAUAUCUUAUAGAAAACACUCUCAUAUCUUAUGAAAAAAUUAUAAGUGUGGAGUGUGAGAAUGAAUAGUGACUGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018987860.1
ncRNA:24   UAGUCAGUGAUAAGUAAGAGUGUG   1
  *|==*||*|||||||||||||||*
targets:263   CUUGUUCUCUAUUCAUUCUCACAA   286

2.0 PREDICTED: Juglans regia putative kinase-like protein TMKL1 (LOC109007948), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018982907.1
ncRNA:24   UAGUCAGUGAUAAGUAAGAGUGUG   1
  *|=|*||||||||||*|||||||=
targets:1507   CUUAAUCACUAUUCACUCUCACAU   1530

2.5 PREDICTED: Juglans regia microtubule-binding protein TANGLED-like (LOC109004374), mRNA NA coding protein psRNATarget