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BaseInfo

ncRNA ID novel_jre_miR444
Species Juglans regia
Class miRNA
Genome position NW_017443521.1:317218-317318 [+]
Reference genome wgs.5d
Source SRR1170957
Length 23
Mature sequence(if miRNA) 79 - UAAUUGGAGAAUUGUAGGAAAAU - 101
Stem-loop(if miRNA) --A     U   -        G    -     --U       U        AU
   UUCCU ACA UUCUUCGG UAUG UGGUU   GUAAGUU GUCAGCCC  U
   ||||| ||| |||||||| |||| |||||   ||||||| ||||||||  A
   AAGGA UGU AAGAGGUU AUAC AUCAG   UAUUCAG CGGUUGGG  A
UAA     -   U        A    G     UGU       -        AU
Stem-loop sequence AUUCCUUACAUUCUUCGGGUAUGUGGUUUGUAAGUUUGUCAGCCCAUUAAUAGGGUUGGCGACUUAUUGUGACUAGCAUAAUUGGAGAAUUGUAGGAAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018961942.1
ncRNA:23   UAAAAGGAUGUUAAGAGGUUAAU   1
  =|||||=|**|||||||||||||
targets:746   GUUUUCUUCAAAUUCUCCAAUUA   768

3.0 PREDICTED: Juglans regia potassium channel KAT1-like (LOC108988626), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018961941.1
ncRNA:23   UAAAAGGAUGUUAAGAGGUUAAU   1
  =|||||=|**|||||||||||||
targets:746   GUUUUCUUCAAAUUCUCCAAUUA   768

3.0 PREDICTED: Juglans regia potassium channel KAT1-like (LOC108988626), transcript variant X1, mRNA NA coding protein psRNATarget