Search result

BaseInfo

ncRNA ID novel_jre_miR443
Species Juglans regia
Class miRNA
Genome position NW_017443335.1:20513-20602 [+]
Reference genome wgs.5d
Source SRR1170957
Length 24
Mature sequence(if miRNA) 67 - GUGUGAGAAUGAAUAGUGACUGAU - 90
Stem-loop(if miRNA) --             CUG  -     C     CUU    AAAAUUA
  CAGUCACUAUUUA   CU AUACC CACAC   AUGA       A
  |||||||||||||   || ||||| |||||   ||||
  GUCAGUGAUAAGU   GA UGUGG GUGUG   UAUU       A
UA             -AA  G     A     AAU    AAAAAAG
Stem-loop sequence CAGUCACUAUUUACUGCUAUACCCCACACCUUAUGAAAAAUUAAAGAAAAAAUUAUUAAGUGUGAGGUGUGAGAAUGAAUAGUGACUGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018987860.1
ncRNA:24   UAGUCAGUGAUAAGUAAGAGUGUG   1
  *|==*||*|||||||||||||||*
targets:263   CUUGUUCUCUAUUCAUUCUCACAA   286

2.0 PREDICTED: Juglans regia putative kinase-like protein TMKL1 (LOC109007948), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018982907.1
ncRNA:24   UAGUCAGUGAUAAGUAAGAGUGUG   1
  *|=|*||||||||||*|||||||=
targets:1507   CUUAAUCACUAUUCACUCUCACAU   1530

2.5 PREDICTED: Juglans regia microtubule-binding protein TANGLED-like (LOC109004374), mRNA NA coding protein psRNATarget