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BaseInfo

ncRNA ID	novel_jre_miR428
Species	Juglans regia
Class	miRNA
Genome position	NW_017443562.1:750804-750915 [+]
Reference genome	wgs.5d
Source	SRR1168796;SRR1168883
Length	24
Mature sequence(if miRNA)	89 - UUUCAAAGUGACUGUACGGCGCUU - 112
Stem-loop(if miRNA)	--A U   C   A             ---U   AAUAAAUACGGGACCCACAUGAAA    C CCG ACA UCAUUUUGAAAAA    GUG                        A    | ||| ||| |||||||||||||    |||                        A    G GGC UGU AGUGAAACUUUUU    CCU                        A UUC C   A   C             CUCA   CAGGUGAUAAUUUUUUAAUUAAAA
Stem-loop sequence	ACUCCGCACAAUCAUUUUGAAAAAUGUGAAUAAAUACGGGACCCACAUGAAAAAAAAAAUUAAUUUUUUAAUAGUGGACUCCACUCUUUUUCAAAGUGACUGUACGGCGCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018994468.1	ncRNA:24   UUCGCGGCAUGUCAGUGAAACUUU   1   |||=*||||=|||||||||||||| targets:1452   AAGUACCGUGCAGUCACUUUGAAA   1475 Target Full Sequence	1.0	PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC109012694), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018952930.1	ncRNA:24   UUCGCGGCAUGUCAGUGAAACUUU   1   |||||||*|=|||||||||||||| targets:3183   AAGCGCCUUGCAGUCACUUUGAAA   3206 Target Full Sequence	2.0	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018952929.1	ncRNA:24   UUCGCGGCAUGUCAGUGAAACUUU   1   |||||||*|=|||||||||||||| targets:3186   AAGCGCCUUGCAGUCACUUUGAAA   3209 Target Full Sequence	2.0	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018980788.1	ncRNA:24   UUCGCGGCAUGUCAGUGAAACUUU   1   |||||||||=|||||=|||||||| targets:1608   AAGCGCCGUGCAGUCGCUUUGAAA   1631 Target Full Sequence	2.5	PREDICTED: Juglans regia histone-lysine N-methyltransferase ATXR2-like (LOC109002870), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018969255.1	ncRNA:24   UUCGCGGCAUGUCAGUGAAACUUU   1   *||||||||=||||||=||||||| targets:1914   CAGCGCCGUGCAGUCAUUUUGAAA   1937 Target Full Sequence	2.5	PREDICTED: Juglans regia CTP synthase-like (LOC108994151), transcript variant X1, mRNA	NA	coding protein	psRNATarget