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BaseInfo

ncRNA ID	novel_jre_miR419
Species	Juglans regia
Class	miRNA
Genome position	NW_017389791.1:322635-322778 [+]
Reference genome	wgs.5d
Source	SRR1170956;SRR1170964
Length	24
Mature sequence(if miRNA)	1 - AACCGUGAAGUGCGUAAUCGUCGC - 24
Stem-loop(if miRNA)	--         G                                 ----------    AG     U  U      U   AACCGUGAA UGCGUAAUCGUCGCGUAAUCGCUUUGAAAAAGA          GUGG  UCCAC AU AAAAAA U   ||||||||| |||||||||||||||||||||||||||||||||          ||||  ||||| || |||||| A   UUGGCACUU ACGCAUUGGCGGCGCGUUAGCGAAACUUUUUUU          UACC  AGGUG UA UUUUUU A UG         A                                 ACUUAAUUUG    CU     -  C      U
Stem-loop sequence	AACCGUGAAGUGCGUAAUCGUCGCGUAAUCGCUUUGAAAAAGAGUGGAGUCCACUAUUAAAAAAUUAAUUUUUUUCAUGUGGAUCCCAUGUUUAAUUCAUUUUUUUCAAAGCGAUUGCGCGGCGGUUACGCAAUUCACGGUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018951157.1	ncRNA:24   CGCUGCUAAUGCGUGAAGUGCCAA   1   |||=||=||||||||||||||||| targets:4427   GCGGCGGUUACGCACUUCACGGUU   4450 Target Full Sequence	1.0	PREDICTED: Juglans regia protein NLP9 (LOC108980290), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018951175.1	ncRNA:24   CGCUGCUAAUGCGUGAAGUGCCAA   1   |||=||=||||||||||||||||| targets:4417   GCGGCGGUUACGCACUUCACGGUU   4440 Target Full Sequence	1.0	PREDICTED: Juglans regia protein NLP9 (LOC108980290), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018951165.1	ncRNA:24   CGCUGCUAAUGCGUGAAGUGCCAA   1   |||=||=||||||||||||||||| targets:4334   GCGGCGGUUACGCACUUCACGGUU   4357 Target Full Sequence	1.0	PREDICTED: Juglans regia protein NLP9 (LOC108980290), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018951169.1	ncRNA:24   CGCUGCUAAUGCGUGAAGUGCCAA   1   |||=||=||||||||||||||||| targets:4045   GCGGCGGUUACGCACUUCACGGUU   4068 Target Full Sequence	1.0	PREDICTED: Juglans regia protein NLP9 (LOC108980290), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018958453.1	ncRNA:24   CGCUGCUAAUGCGUGAAGUGCCAA   1   ||-|-|=|||=||||||||||||| targets:1166   GC-A-GGUUAUGCACUUCACGGUU   1187 Target Full Sequence	2.0	PREDICTED: Juglans regia pentatricopeptide repeat-containing protein At5g50390, chloroplastic (LOC108985966), mRNA	NA	coding protein	psRNATarget