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BaseInfo

ncRNA ID novel_jre_miR409
Species Juglans regia
Class miRNA
Genome position NW_017388999.1:114496-114629 [+]
Reference genome wgs.5d
Source SRR1170956;SRR1170958;SRR1170959
Length 19
Mature sequence(if miRNA) 116 - UCGGACCAGGCUUCAUUCC - 134
Stem-loop(if miRNA) --    UU      CU    GG     U   GAUGU       U   -        -----------      U
  AAUG  GUUUGG  CGAG  CAUGU GGU     UAAGUCU UGA GGUUUUUU           GAGACU U
  ||||  ||||||  ||||  ||||| |||     ||||||| ||| ||||||||           ||||||
  UUAC  CGGACC  GCUC  GUGUA CCG     AUUUAGA ACU CUAGAAAA           CUCUGA U
CC    UU      AG    UA     U   --AAU       C   U        AACAAAAAGAC      G
Stem-loop sequence AAUGUUGUUUGGCUCGAGGGCAUGUUGGUGAUGUUAAGUCUUUGAGGUUUUUUGAGACUUUUGAGUCUCCAGAAAAACAAAAAAGAUCUUCACAGAUUUAUAAGCCUAUGUGAUCUCGGACCAGGCUUCAUUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018992312.1
ncRNA:19   CCUUACUUCGGACCAGGCU   1
  ||||||||||||||||||=
targets:1216   GGAAUGAAGCCUGGUCCGG   1234

1.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-15 (LOC109011208), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018992313.1
ncRNA:19   CCUUACUUCGGACCAGGCU   1
  ||||||||||||||||||=
targets:1838   GGAAUGAAGCCUGGUCCGG   1856

1.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-15 (LOC109011208), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018989954.1
ncRNA:19   CCUUACUUCGGACCAGGCU   1
  ||=|||||||||||||||=
targets:661   GGGAUGAAGCCUGGUCCGG   679

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-8-like (LOC109009482), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018972556.1
ncRNA:19   CCUUACUUCGGACCAGGCU   1
  ||=|||||||||||||||=
targets:903   GGGAUGAAGCCUGGUCCGG   921

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-14-like (LOC108996578), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018972555.1
ncRNA:19   CCUUACUUCGGACCAGGCU   1
  ||=|||||||||||||||=
targets:1003   GGGAUGAAGCCUGGUCCGG   1021

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-14-like (LOC108996578), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018989955.1
ncRNA:19   CCUUACUUCGGACCAGGCU   1
  ||=|||||||||||||||=
targets:968   GGGAUGAAGCCUGGUCCGG   986

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-8-like (LOC109009482), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018992318.1
ncRNA:19   CCUUACUUCGGACCAGGCU   1
  ||=|||||||||||||||=
targets:1077   GGGAUGAAGCCUGGUCCGG   1095

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-14-like (LOC109011210), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018950208.1
ncRNA:19   CCUUACUUCGGACCAGGCU   1
  ||=|||||||||||||||=
targets:1021   GGGAUGAAGCCUGGUCCGG   1039

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-15-like (LOC108979516), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018950207.1
ncRNA:19   CCUUACUUCGGACCAGGCU   1
  ||=|||||||||||||||=
targets:1026   GGGAUGAAGCCUGGUCCGG   1044

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-15-like (LOC108979516), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018992317.1
ncRNA:19   CCUUACUUCGGACCAGGCU   1
  ||=|||||||||||||||=
targets:1170   GGGAUGAAGCCUGGUCCGG   1188

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-14-like (LOC109011210), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018963984.1
ncRNA:19   CCUUACUUCGGACCAGGCU   1
  ||=|||||||||||||||=
targets:1351   GGGAUGAAGCCUGGUCCGG   1369

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein REVOLUTA-like (LOC108990117), mRNA NA coding protein psRNATarget
XM_018953220.1
ncRNA:19   CCUUACUUCGGACCAGGCU   1
  ||=|||||||||||||||=
targets:1419   GGGAUGAAGCCUGGUCCGG   1437

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein REVOLUTA-like (LOC108981958), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018953221.1
ncRNA:19   CCUUACUUCGGACCAGGCU   1
  ||=|||||||||||||||=
targets:1419   GGGAUGAAGCCUGGUCCGG   1437

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein REVOLUTA-like (LOC108981958), transcript variant X2, mRNA NA coding protein psRNATarget
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