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BaseInfo

ncRNA ID	novel_jre_miR408
Species	Juglans regia
Class	miRNA
Genome position	NW_017388949.1:99468-99572 [-]
Reference genome	wgs.5d
Source	SRR1170956
Length	24
Mature sequence(if miRNA)	1 - UUUUUCAAAAUGAUUGCACGGCAC - 24
Stem-loop(if miRNA)	--  A        CC        A    ----------   GU   C   U      U   GC GUGCAGUC  UUUGAAAA GAGU          GGG  CCA UAU AGAAAA U   || ||||||||  |||||||| ||||          |||  ||| ||| |||||| A   CG CACGUUAG  AAACUUUU UUCA          CCC  GGU AUA UUUUUU A CA  G        UA        -    CUUAUUUAUG   UG   -   C      U
Stem-loop sequence	GCAGUGCAGUCCCUUUGAAAAAGAGUGGGGUCCACUAUUAGAAAAUUAAUUUUUUUCAUAUGGGUCCCGUAUUUAUUCACUUUUUUCAAAAUGAUUGCACGGCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018989745.1	ncRNA:24   CACGGCACGUUAGUAAAACUUUUU   1   |||=|*|||||||||||||||||| targets:1396   GUGUCAUGCAAUCAUUUUGAAAAA   1419 Target Full Sequence	1.0	PREDICTED: Juglans regia probable uridine nucleosidase 2 (LOC109009305), mRNA	NA	coding protein	psRNATarget
XM_018969255.1	ncRNA:24   CACGGCACGUUAGUAAAACUUUUU   1   |*||||||||=||||||||||||| targets:1916   GCGCCGUGCAGUCAUUUUGAAAAA   1939 Target Full Sequence	1.0	PREDICTED: Juglans regia CTP synthase-like (LOC108994151), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018994005.1	ncRNA:24   CACGGCACGUUAGUAAAACUUUUU   1   ***=||*|=||||||||||||||| targets:1006   ACAUCGCGUAAUCAUUUUGAAAAA   1029 Target Full Sequence	2.0	PREDICTED: Juglans regia dnAJ-like protein slr0093 (LOC109012397), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018994004.1	ncRNA:24   CACGGCACGUUAGUAAAACUUUUU   1   ***=||*|=||||||||||||||| targets:1328   ACAUCGCGUAAUCAUUUUGAAAAA   1351 Target Full Sequence	2.0	PREDICTED: Juglans regia dnAJ-like protein slr0093 (LOC109012397), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018992659.1	ncRNA:24   CACGGCACGUUAGUAAAACUUUUU   1   ||*==||*||*||||||||||||| targets:3546   GUUUUGUACAUUCAUUUUGAAAAA   3569 Target Full Sequence	2.0	PREDICTED: Juglans regia TMV resistance protein N-like (LOC109011448), mRNA	NA	coding protein	psRNATarget
XM_018994468.1	ncRNA:24   CACGGCACGUUAGUAAAACUUUUU   1   ||*|||||||=|||*||||||||| targets:1454   GUACCGUGCAGUCACUUUGAAAAA   1477 Target Full Sequence	2.5	PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC109012694), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018956793.1	ncRNA:24   CACGGCACGUUAGUAAAACUUUUU   1   *||==||*||||||||||*||||| targets:1332   AUGUUGUACAAUCAUUUUAAAAAA   1355 Target Full Sequence	2.5	PREDICTED: Juglans regia probable long-chain-alcohol O-fatty-acyltransferase 5 (LOC108984746), mRNA	NA	coding protein	psRNATarget
XM_018968875.1	ncRNA:24   CACGGCACGUUAGUAAAACUUUUU   1   *****|||||||||||||||=||= targets:81   UACAAGUGCAAUCAUUUUGAGAAG   104 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC108993841 (LOC108993841), mRNA	NA	coding protein	psRNATarget
XM_018987905.1	ncRNA:24   CACGGCACGUUAGUAAAACUUUUU   1   *****|||||||||||||||=||= targets:90   UACAAGUGCAAUCAUUUUGAGAAG   113 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC109007985 (LOC109007985), mRNA	NA	coding protein	psRNATarget
XM_018950121.1	ncRNA:24   CACGGCACGUUAGUAAAACUUUUU   1   ||*==||*=|*||||||||||||| targets:2288   GUUUUGUAUAUUCAUUUUGAAAAA   2311 Target Full Sequence	3.0	PREDICTED: Juglans regia disease resistance protein RPP5-like (LOC108979448), transcript variant X3, mRNA	NA	coding protein	psRNATarget