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BaseInfo

ncRNA ID	novel_jre_miR406
Species	Juglans regia
Class	miRNA
Genome position	NW_017388902.1:149753-149925 [+]
Reference genome	wgs.5d
Source	SRR1170956
Length	24
Mature sequence(if miRNA)	1 - AAUGAUAGUUGCAGUUAUGAGUGU - 24
Stem-loop(if miRNA)	--    AUAGU           ---------   UG A         UAAA            ----A   AAUAAAUACGGAAUCUAUAAAAA   AAUG     UGCAGUUAUGA         GUG  C AGUGUCGUG    UAUUUUAAAAAA     GUG                       A   ||||     |||||||||||         |||  | |||||||||    ||||||||||||     |||   UUAC     AUGUUAGUACU         UAU  G UCAUAGUAU    GUGAAAUUUUUU     UUU                       A UA    GAUGU           UUAGUAUUU   GU C         --CA            AUUAU   AGAUAAUAAUUUUUUAAUUAUAA
Stem-loop sequence	AAUGAUAGUUGCAGUUAUGAGUGUGCAAGUGUCGUGUAAAUAUUUUAAAAAAAGUGAAUAAAUACGGAAUCUAUAAAAAAAAAUAUUAAUUUUUUAAUAAUAGAUUUUAUUAUUUUUUAAAGUGACUAUGAUACUCGUGUAUUUUAUGAUUUCAUGAUUGUAUGUAGCAUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018970092.1	ncRNA:24   UGUGAGUAUUGACGUUGAUAGUAA   1   ||=|*||*|||||||||||||||| targets:3860   ACGCACACAACUGCAACUAUCAUU   3883 Target Full Sequence	1.0	PREDICTED: Juglans regia translation initiation factor eIF-2B subunit epsilon (LOC108994766), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018969255.1	ncRNA:24   UGUGAGUAUUGACGUUGAUAGUAA   1   |||||||*||=||||||||||||| targets:1991   ACACUCACAAUUGCAACUAUCAUU   2014 Target Full Sequence	2.0	PREDICTED: Juglans regia CTP synthase-like (LOC108994151), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018952930.1	ncRNA:24   UGUGAGUAUUGACGUUGAUAGUAA   1   =||=|||*=||||||||||||||| targets:3297   GCAUUCACGACUGCAACUAUCAUU   3320 Target Full Sequence	2.0	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018952929.1	ncRNA:24   UGUGAGUAUUGACGUUGAUAGUAA   1   =||=|||*=||||||||||||||| targets:3300   GCAUUCACGACUGCAACUAUCAUU   3323 Target Full Sequence	2.0	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019004598.1	ncRNA:24   UGUGAGUAUUGACGUUGAUAGUAA   1   |||||||*|||||=|||||||||| targets:1384   ACACUCACAACUGUAACUAUCAUU   1407 Target Full Sequence	2.5	PREDICTED: Juglans regia branched-chain-amino-acid aminotransferase 2, chloroplastic-like (LOC109021870), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019004597.1	ncRNA:24   UGUGAGUAUUGACGUUGAUAGUAA   1   |||||||*|||||=|||||||||| targets:1503   ACACUCACAACUGUAACUAUCAUU   1526 Target Full Sequence	2.5	PREDICTED: Juglans regia branched-chain-amino-acid aminotransferase 2, chloroplastic-like (LOC109021870), transcript variant X1, mRNA	NA	coding protein	psRNATarget