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BaseInfo

ncRNA ID	novel_jre_miR399
Species	Juglans regia
Class	miRNA
Genome position	NW_017443622.1:132390-132499 [+]
Reference genome	wgs.5d
Source	SRR1170956;SRR1170957;SRR1168796;SRR1170970;SRR1168795;SRR1168886
Length	24
Mature sequence(if miRNA)	87 - UUUCAAAGUGAUUGCACGGUACUU - 110
Stem-loop(if miRNA)	--    UA            A           ---------- GU    U  U       U   GUAC  UGCAGUCGCUUU GAAAAAAGUGA          G  CUAC AU AAAAAAU A   ||||  |||||||||||| |||||||||||          |  |||| || |||||||   CAUG  ACGUUAGUGAAA CUUUUUUCACU          C  GGUG UA UUUUUUA U UU    GC            -           UAUUUAUGCC UG    -  C       U
Stem-loop sequence	GUACUAUGCAGUCGCUUUAGAAAAAAGUGAGGUCUACUAUUAAAAAAUUAUUAUUUUUUCAUGUGGGUCCCGUAUUUAUUCACUUUUUUCAAAGUGAUUGCACGGUACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018994468.1	ncRNA:24   UUCAUGGCACGUUAGUGAAACUUU   1   ||||||||||||=||||||||||| targets:1452   AAGUACCGUGCAGUCACUUUGAAA   1475 Target Full Sequence	1.5	PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC109012694), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018952930.1	ncRNA:24   UUCAUGGCACGUUAGUGAAACUUU   1   |||*=||*||||=||||||||||| targets:3183   AAGCGCCUUGCAGUCACUUUGAAA   3206 Target Full Sequence	2.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018952929.1	ncRNA:24   UUCAUGGCACGUUAGUGAAACUUU   1   |||*=||*||||=||||||||||| targets:3186   AAGCGCCUUGCAGUCACUUUGAAA   3209 Target Full Sequence	2.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X1, mRNA	NA	coding protein	psRNATarget