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BaseInfo

ncRNA ID novel_jre_miR384
Species Juglans regia
Class miRNA
Genome position NW_017443397.1:590745-590906 [+]
Reference genome wgs.5d
Source SRR1170956;SRR1170958;SRR1170959
Length 24
Mature sequence(if miRNA) 1 - AUUUUGGCUAAUAGAUGGAUAAUC - 24
Stem-loop(if miRNA) --         AAU         A      A  A      AGC   GA       -C    CAUU      U  AA     GA
  AUUUUGGCU   AGAUGGAUA UCCAAU UG GGUUAG   AUU  CAAUGGU  UAGC    GCCAAG CC  AAUUU  C
  |||||||||   ||||||||| |||||| || ||||||   |||  |||||||  ||||    |||||| ||  |||||
  UAAAACUGA   UCUAUCUAU AGGUUA AC CUAAUU   UAG  GUUACCA  AUUG    CGGUUU GG  UUGAA  U
AA         AAC         C      C  -      --A   AG       AA    AAAU      U  AG     AA
Stem-loop sequence AUUUUGGCUAAUAGAUGGAUAAUCCAAUAUGAGGUUAGAGCAUUGACAAUGGUCUAGCCAUUGCCAAGUCCAAAAUUUGACUAAAAGUUGAGGUUUUGGCUAAAGUUAAAACCAUUGGAGAUAUUAAUCCACAUUGGACUAUCUAUCUCAAAGUCAAAAUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018956604.1
ncRNA:24   CUAAUAGGUAGAUAAUCGGUUUUA   1
  ||**||*||||||||||||=||||
targets:664   GAGCAUGCAUCUAUUAGCCGAAAU   687

2.5 PREDICTED: Juglans regia Golgi SNAP receptor complex member 1-1-like (LOC108984599), mRNA NA coding protein psRNATarget