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BaseInfo

ncRNA ID novel_jre_miR377
Species Juglans regia
Class miRNA
Genome position NW_017442862.1:352586-352672 [+]
Reference genome wgs.5d
Source SRR1170956;SRR1170959
Length 21
Mature sequence(if miRNA) 1 - CUCUUAGGCAAUGUGGGAUCC - 21
Stem-loop(if miRNA) --    U              --       UAAU     AGA   A
  CUCU AGGCAAUGUGGGAU  CCCAUUA    AUUCU   UUG G
  |||| ||||||||||||||  |||||||    |||||   |||
  GAGA UCUGUUACACUCUA  GGGUAAU    UAGGA   AAC U
AG    U              GU       -UGU     --G   A
Stem-loop sequence CUCUUAGGCAAUGUGGGAUCCCAUUAUAAUAUUCUAGAUUGAGUACAAGAGGAUUGUUAAUGGGUGAUCUCACAUUGUCUUAGAGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018951467.1
ncRNA:21   CCUAGGGUGUAACGGAUUCUC   1
  |||||||||||||||||*|||
targets:292   GGAUCCCACAUUGCCUAUGAG   312

1.5 PREDICTED: Juglans regia haloacid dehalogenase-like hydrolase domain-containing protein 3 (LOC108980528), transcript variant X1, mRNA NA coding protein psRNATarget