Search result

BaseInfo

ncRNA ID	novel_jre_miR373
Species	Juglans regia
Class	miRNA
Genome position	NW_017441643.1:10216-10362 [+]
Reference genome	wgs.5d
Source	SRR1170956
Length	22
Mature sequence(if miRNA)	1 - CAACCGUGAAUUGUGCAACUGC - 22
Stem-loop(if miRNA)	--C         U    C  C  C C       U              AAUAAAAUAUAAAACCCACA GAAAAAAAAUUUA    AACCGUGAA UGUG AA UG C CGUAAUC CUUUGAAAAAAGUG                    U             A    ||||||||| |||| || || | ||||||| ||||||||||||||                    |             U    UUGGCACUU ACGC UU AC G GUAUUAG GAAACUUUUUUUAU                    C             U AUA         C    A  U  A C       U              ------------------CC AAGUGAUAAUUUU
Stem-loop sequence	CAACCGUGAAUUGUGCAACUGCCCCGUAAUCUCUUUGAAAAAAGUGAAUAAAAUAUAAAACCCACAUGAAAAAAAAUUUAAUUUUUUAAUAGUGAACCCUAUUUUUUUCAAAGUGAUUAUGCGACAUUUACGCACUUCACGGUUAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018969307.1	ncRNA:22   CGUCAACGUGUUAAGUGCCAAC   1   ||||||*||||||||||||||| targets:2156   GCAGUUACACAAUUCACGGUUG   2177 Target Full Sequence	1.0	PREDICTED: Juglans regia DNAJ protein JJJ1 homolog (LOC108994190), mRNA	NA	coding protein	psRNATarget
XM_018966186.1	ncRNA:22   CGUCAACGUGUUAAGUGCCAAC   1   *|=|||**=||||||||||||| targets:1324   UCGGUUAGGCAAUUCACGGUUG   1345 Target Full Sequence	3.0	PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC108991802), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018966185.1	ncRNA:22   CGUCAACGUGUUAAGUGCCAAC   1   *|=|||**=||||||||||||| targets:1358   UCGGUUAGGCAAUUCACGGUUG   1379 Target Full Sequence	3.0	PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC108991802), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018996406.1	ncRNA:22   CGUCAACGUGUUAAGUGCCAAC   1   |==|*|*|*||||||||||||| targets:1491   GUGGCUUCUCAAUUCACGGUUG   1512 Target Full Sequence	3.0	PREDICTED: Juglans regia probable pectinesterase/pectinesterase inhibitor 17 (LOC109014084), mRNA	NA	coding protein	psRNATarget
XM_018970187.1	ncRNA:22   CGUCAACGUGUUAAGUGCCAAC   1   **||||*|*||||||||||||* targets:256   CGAGUUUCUCAAUUCACGGUUU   277 Target Full Sequence	3.0	PREDICTED: Juglans regia ubiquitin-like-specific protease ESD4 (LOC108994812), mRNA	NA	coding protein	psRNATarget