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BaseInfo

ncRNA ID novel_jre_miR372
Species Juglans regia
Class miRNA
Genome position NW_017443274.1:653623-653750 [+]
Reference genome wgs.5d
Source SRR1168796;SRR1170956;SRR1170958;SRR1170959;SRR1170962;SRR1170963;SRR1170964;SRR1170965;SRR1168795;SRR1170969;SRR1170970;SRR1168881;SRR1168883;SRR1168884;SRR1168886
Length 24
Mature sequence(if miRNA) 1 - AAUAGACAAGUCUCAUACAAGCCU - 24
Stem-loop(if miRNA) --                 C   C    UA     C A     CU    AAU   U   AAUUU
  AAUAGACAAGUCUCAUA AAG CUUU  UAAAA A UGGGU  CACU   AAA AAU     U
  ||||||||||||||||| ||| ||||  ||||| | |||||  ||||   ||| |||     U
  UUGUCUGUUUAGAGUAU UUC GAAA  AUUUU U ACCUA  GUGG   UUU UUA     U
AU                 A   A    -C     U A     AG    AAU   U   CAUUU
Stem-loop sequence AAUAGACAAGUCUCAUACAAGCCUUUUAUAAAACAAUGGGUCUCACUAAUAAAUAAUAAUUUUUUUUUACAUUUUUUUAAGGUGGAAUCCAAUUUUUUACAAAGACUUAUAUGAGAUUUGUCUGUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018950717.1
ncRNA:24   UCCGAACAUACUCUGAACAGAUAA   1
  =||||||*||||||||||||||||
targets:1430   GGGCUUGCAUGAGACUUGUCUAUU   1453

1.0 PREDICTED: Juglans regia aminotransferase ALD1-like (LOC108979924), transcript variant X3, mRNA NA coding protein psRNATarget
XM_018950714.1
ncRNA:24   UCCGAACAUACUCUGAACAGAUAA   1
  =||||||*||||||||||||||||
targets:1918   GGGCUUGCAUGAGACUUGUCUAUU   1941

1.0 PREDICTED: Juglans regia aminotransferase ALD1-like (LOC108979924), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018950716.1
ncRNA:24   UCCGAACAUACUCUGAACAGAUAA   1
  =||||||*||||||||||||||||
targets:2036   GGGCUUGCAUGAGACUUGUCUAUU   2059

1.0 PREDICTED: Juglans regia aminotransferase ALD1-like (LOC108979924), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018971339.1
ncRNA:24   UCCGAACAUACUCUGAACAGAUAA   1
  |*||||||||||*|||||||||||
targets:1047   AAGCUUGUAUGAAACUUGUCUAUU   1070

1.5 PREDICTED: Juglans regia uncharacterized LOC108995726 (LOC108995726), mRNA NA coding protein psRNATarget