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BaseInfo

ncRNA ID novel_jre_miR371
Species Juglans regia
Class miRNA
Genome position NW_017440139.1:34489-34579 [+]
Reference genome wgs.5d
Source SRR1170956;SRR1170957
Length 22
Mature sequence(if miRNA) 70 - UGCUCACUCUCUAUCUGUCACC - 91
Stem-loop(if miRNA) --       -             A  U     UUCUUGCAUAUAUG
  UGACAGA AGAGAGUGAGCAC CA GGUAU              C
  ||||||| ||||||||||||| || |||||
  ACUGUCU UCUCUCACUCGUG GU UCGAA              C
CC       A             C  C     GUUCGUACUUUGGC
Stem-loop sequence UGACAGAAGAGAGUGAGCACACAUGGUAUUUCUUGCAUAUAUGCCCGGUUUCAUGCUUGAAGCUCUGCGUGCUCACUCUCUAUCUGUCACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018958349.1
ncRNA:22   CCACUGUCUAUCUCUCACUCGU   1
  **|||=||||||||||*|||||
targets:237   AUUGAUAGAUAGAGAGAGAGCA   258

2.5 PREDICTED: Juglans regia shaggy-related protein kinase epsilon-like (LOC108985888), mRNA NA coding protein psRNATarget
XM_018977338.1
ncRNA:22   CCACUGUCUAUCUCUCACUCGU   1
  ||*||*||*||||||||||||*
targets:882   GGAGAAAGUUAGAGAGUGAGCU   903

3.0 PREDICTED: Juglans regia transcription factor GTE4 (LOC109000469), mRNA NA coding protein psRNATarget