Search result

BaseInfo

ncRNA ID	novel_jre_miR370
Species	Juglans regia
Class	miRNA
Genome position	NW_017439310.1:21579-21741 [-]
Reference genome	wgs.5d
Source	SRR1170956;SRR1170957;SRR1170959
Length	23
Mature sequence(if miRNA)	1 - AUUCCACGACUGUAUAUAACAUU - 23
Stem-loop(if miRNA)	--  A  CU          -    UG     GU        C     -     A    AAUAAAUAU   A     --A      UAA   UG UA  UGCAGUCGUG AGUG  CAAGC  CGUGCAGU GUUUU AAAAA AGUG         GGG UCCAC   UGAAAA   A   || ||  |||||||||| ||||  |||||  |||||||| ||||| ||||| ||||         ||| |||||   ||||||   U   AC AU  AUGUCAGCAC UUAU  GUUUG  GCACGUCA CGAAA UUUUU UCAC         CCC AGGUG   AUUUUU   U UU  A  AU          C    GU     UG        A     C     A    ---------   -     AUA      UUA
Stem-loop sequence	UGAUACUUGCAGUCGUGAGUGUGCAAGCGUCGUGCAGUCGUUUUAAAAAAAGUGAAUAAAUAUGGGAUCCACAUGAAAAUAAAUUAUUUUUUUAAUAGUGGACCCCACUAUUUUUCAAAGCAACUGCACGGUGUUUGUGUAUUCCACGACUGUAUAUAACAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018967640.1	ncRNA:23   UUACAAUAUAUGUCAGCACCUUA   1   |||||||*|||=||||||||||| targets:2070   AAUGUUACAUAUAGUCGUGGAAU   2092 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC108992921 (LOC108992921), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018967641.1	ncRNA:23   UUACAAUAUAUGUCAGCACCUUA   1   |||||||*|||=||||||||||| targets:2120   AAUGUUACAUAUAGUCGUGGAAU   2142 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC108992921 (LOC108992921), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018974968.1	ncRNA:23   UUACAAUAUAUGUCAGCACCUUA   1   |||||||*|||||||||||*||| targets:1090   AAUGUUACAUACAGUCGUGAAAU   1112 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC108998416 (LOC108998416), mRNA	NA	coding protein	psRNATarget