Search result

BaseInfo

ncRNA ID	novel_jre_miR361
Species	Juglans regia
Class	miRNA
Genome position	NW_017431137.1:998-1151 [+]
Reference genome	wgs.5d
Source	SRR1170956;SRR1170957
Length	21
Mature sequence(if miRNA)	134 - UUGUGAGAUCUUUUUGUGACU - 154
Stem-loop(if miRNA)	--C        A             AA   CU      -GAGG   CUUG         -----AU  GA        CU    CAUAAAGA AUUUUACAAAAGU  ACU  UAAACU     GGC    AUAUGGUAC       UA  UUGUAAAG  A    |||||||| |||||||||||||  |||  ||||||     |||    |||||||||       ||  ||||||||  C    GUGUUUUU UAGAGUGUUUUCA  UGG  GUUUGA     CCG    UAUAUUAUG       AU  AACAUUUU  C UCA        C             CA   AU      AAGUA   -AAA         GAUAUAU  AA        AU
Stem-loop sequence	CCAUAAAGAAAUUUUACAAAAGUAAACUCUUAAACUGAGGGGCCUUGAUAUGGUACAUUAGAUUGUAAAGCUACCUAUUUUACAAAAUAUAUAUAGGUAUUAUAUAAAGCCAUGAAAGUUUGUAGGUACACUUUUGUGAGAUCUUUUUGUGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018994957.1	ncRNA:21   UCAGUGUUUUUCUAGAGUGUU   1   =*|||||||=||||||||||| targets:1789   GUUCACAAAGAGAUCUCACAA   1809 Target Full Sequence	1.5	PREDICTED: Juglans regia uncharacterized LOC109013035 (LOC109013035), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018994958.1	ncRNA:21   UCAGUGUUUUUCUAGAGUGUU   1   =*|||||||=||||||||||| targets:1846   GUUCACAAAGAGAUCUCACAA   1866 Target Full Sequence	1.5	PREDICTED: Juglans regia uncharacterized LOC109013035 (LOC109013035), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018994956.1	ncRNA:21   UCAGUGUUUUUCUAGAGUGUU   1   =*|||||||=||||||||||| targets:1849   GUUCACAAAGAGAUCUCACAA   1869 Target Full Sequence	1.5	PREDICTED: Juglans regia uncharacterized LOC109013035 (LOC109013035), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018994955.1	ncRNA:21   UCAGUGUUUUUCUAGAGUGUU   1   =*|||||||=||||||||||| targets:1861   GUUCACAAAGAGAUCUCACAA   1881 Target Full Sequence	1.5	PREDICTED: Juglans regia uncharacterized LOC109013035 (LOC109013035), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018954367.1	ncRNA:21   UCAGUGUUUUUCUAGAGUGUU   1   |||||=||||||||||||=|| targets:1363   AGUCAUAAAAAGAUCUCAUAA   1383 Target Full Sequence	2.5	PREDICTED: Juglans regia UPF0496 protein At3g49070 (LOC108982893), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018954366.1	ncRNA:21   UCAGUGUUUUUCUAGAGUGUU   1   |||||=||||||||||||=|| targets:1366   AGUCAUAAAAAGAUCUCAUAA   1386 Target Full Sequence	2.5	PREDICTED: Juglans regia UPF0496 protein At3g49070 (LOC108982893), transcript variant X1, mRNA	NA	coding protein	psRNATarget