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BaseInfo

ncRNA ID novel_jre_miR352
Species Juglans regia
Class miRNA
Genome position NW_017388777.1:13082-13185 [-]
Reference genome wgs.5d
Source SRR1170956;SRR1170964
Length 24
Mature sequence(if miRNA) 81 - UCGUGCAGUCACUUUGAAAAAGAG - 104
Stem-loop(if miRNA) --          A           ---------A           UAUU   A  U
  UCGUGCAGUC CUUUGAAAAAG          GUGGGAUCCGC    AAA AA U
  |||||||||| |||||||||||          |||||||||||    ||| || A
  GGUACGUCAG GAAACUUUUUU          UACCCUGGGUG    UUU UU A
GC          C           CACUUAUUUA           UACU   C  U
Stem-loop sequence UCGUGCAGUCACUUUGAAAAAGAGUGGGAUCCGCUAUUAAAAAAUUAAUUUCUUUUCAUGUGGGUCCCAUAUUUAUUCACUUUUUUCAAAGCGACUGCAUGGCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018959423.1
ncRNA:24   GAGAAAAAGUUUCACUGACGUGCU   1
  ||||||||=||||*||||||||||
targets:580   CUCUUUUUUAAAGCGACUGCACGA   603

2.5 PREDICTED: Juglans regia high-affinity nitrate transporter 3.1-like (LOC108986715), mRNA NA coding protein psRNATarget