Search result

BaseInfo

ncRNA ID	novel_jre_miR351
Species	Juglans regia
Class	miRNA
Genome position	NW_017388952.1:156690-156805 [-]
Reference genome	wgs.5d
Source	SRR1170955
Length	24
Mature sequence(if miRNA)	1 - AAUGAUAUGUUUUUAAGUGGGUGU - 24
Stem-loop(if miRNA)	--                                U    UAUUUUAGUUACAA     U      U   ACCUAUUUAAAAACAUGUCAUUUUAUUUUUUU AUCC              ACAUG AUGAAA U   |||||||||||||||||||||||||||||||| ||||              ||||| ||||||   UGGGUGAAUUUUUGUAUAGUAAAAUGGAAAAA UGGG              UGUAU UAUUUU A UG                                -    --------------     -      U
Stem-loop sequence	ACCUAUUUAAAAACAUGUCAUUUUAUUUUUUUUAUCCUAUUUUAGUUACAAACAUGUAUGAAAUUAUUUUUAUUAUGUGGGUAAAAAGGUAAAAUGAUAUGUUUUUAAGUGGGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018995636.1	ncRNA:24   UGUGGGUGAAUUUUUGUAUAGUAA   1   |=|==||=||||||||||=||||| targets:1204   AUAUUCAUUUAAAAACAUGUCAUU   1227 Target Full Sequence	2.5	PREDICTED: Juglans regia 33 kDa ribonucleoprotein, chloroplastic (LOC109013517), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018995634.1	ncRNA:24   UGUGGGUGAAUUUUUGUAUAGUAA   1   |=|==||=||||||||||=||||| targets:1278   AUAUUCAUUUAAAAACAUGUCAUU   1301 Target Full Sequence	2.5	PREDICTED: Juglans regia 33 kDa ribonucleoprotein, chloroplastic (LOC109013517), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018953144.1	ncRNA:24   UGUGGG-UGAAUUUUUGUAUAGUAA   1   =|||||-||*||||||||||||||| targets:152   GCACCCUACCUAAAAACAUAUCAUU   176 Target Full Sequence	3.0	PREDICTED: Juglans regia V-type proton ATPase subunit G1-like (LOC108981892), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018953146.1	ncRNA:24   UGUGGG-UGAAUUUUUGUAUAGUAA   1   =|||||-||*||||||||||||||| targets:152   GCACCCUACCUAAAAACAUAUCAUU   176 Target Full Sequence	3.0	PREDICTED: Juglans regia V-type proton ATPase subunit G1-like (LOC108981892), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018953139.1	ncRNA:24   UGUGGG-UGAAUUUUUGUAUAGUAA   1   =|||||-||*||||||||||||||| targets:152   GCACCCUACCUAAAAACAUAUCAUU   176 Target Full Sequence	3.0	PREDICTED: Juglans regia V-type proton ATPase subunit G1-like (LOC108981892), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018953143.1	ncRNA:24   UGUGGG-UGAAUUUUUGUAUAGUAA   1   =|||||-||*||||||||||||||| targets:152   GCACCCUACCUAAAAACAUAUCAUU   176 Target Full Sequence	3.0	PREDICTED: Juglans regia V-type proton ATPase subunit G1-like (LOC108981892), transcript variant X3, mRNA	NA	coding protein	psRNATarget