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BaseInfo

ncRNA ID ath-miR393b-3p
Species Arabidopsis thaliana
Class miRNA
Genome position chr3:20691647-20691806 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 132 - AUCAUGCGAUCUCUUUGGAUU - 152
Stem-loop(if miRNA)       A                   U     ---U  U     -------------U  UUUAUUCCCCAAUAAUUGUUUUUUUUU
AGAGAA GGAUCCAAAGGGAUCGCAU GAUCC    AA UAAGC              GA                           U
|||||| ||||||||||||||||||| |||||    || |||||              ||                           C
UUUCUU CUUAGGUUUCUCUAGCGUA CUAGG    UU AUUCG              AA                           C
      A                   -     CCUU  C     UUUUACAAACCUUA  CAAAAAGAAGGUAGAAAGCUAACUCUU
Stem-loop sequence AGAGAAAGGAUCCAAAGGGAUCGCAUUGAUCCUAAUUAAGCUGAUUUAUUCCCCAAUAAUUGUUUUUUUUUUCCUUCUCAAUCGAAAGAUGGAAGAAAAACAAAUUCCAAACAUUUUGCUUACUUUUCCGGAUCAUGCGAUCUCUUUGGAUUCAUUCUUU

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
2 PMID:15258262
"Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis";
Sunkar R, Zhu JK;
Plant Cell. 16:2001-2019(2004).
3 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).
4 PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant";
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
Genome Res. 16:1276-1288(2006).
5 PMID:24119003
"Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots";
Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA;
BMC Genomics. 14:701(2013).