ncRNA ID | novel_jre_miR342 |
Species | Juglans regia |
Class | miRNA |
Genome position | NW_017443606.1:703152-703307 [-] |
Reference genome | wgs.5d |
Source | SRR1170955;SRR1170960;SRR1170965;SRR1168883 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AAUAAAGAUCUAGACUCCAAGGCU - 24 |
Stem-loop(if miRNA) |
--        C CAU           -CU  GU  U     CCA  A                 U      UU  G  CA   CUUUGGAG C   AUCUUUAUUUU   CC  UC UGAUU   UU UUUUCAUUAUAAUUUUC AACAAU  UA AA  U   |||||||| |   |||||||||||   ||  || |||||   || ||||||||||||||||| ||||||  || ||   GGAACCUC G   UAGAAAUAAAA   GG  AG ACUAA   AA AAAAGUAAUAUUAAAAG UUGUUA  AU UU  A UC        A AUC           AAC  --  C     -AA  A                 U      UU  G  CU |
Stem-loop sequence | CUUUGGAGCCCAUAUCUUUAUUUUCUCCGUUCUUGAUUCCAUUAUUUUCAUUAUAAUUUUCUAACAAUUUUAGAACAUAUCUUGUAUUAUUGUUUGAAAAUUAUAAUGAAAAAAAAAAAUCACGAGGCAAAAAAUAAAGAUCUAGACUCCAAGGCU |