Search result

BaseInfo

ncRNA ID novel_jre_miR342
Species Juglans regia
Class miRNA
Genome position NW_017443606.1:703152-703307 [-]
Reference genome wgs.5d
Source SRR1170955;SRR1170960;SRR1170965;SRR1168883
Length 24
Mature sequence(if miRNA) 1 - AAUAAAGAUCUAGACUCCAAGGCU - 24
Stem-loop(if miRNA) --        C CAU           -CU  GU  U     CCA  A                 U      UU  G  CA
  CUUUGGAG C   AUCUUUAUUUU   CC  UC UGAUU   UU UUUUCAUUAUAAUUUUC AACAAU  UA AA  U
  |||||||| |   |||||||||||   ||  || |||||   || ||||||||||||||||| ||||||  || ||
  GGAACCUC G   UAGAAAUAAAA   GG  AG ACUAA   AA AAAAGUAAUAUUAAAAG UUGUUA  AU UU  A
UC        A AUC           AAC  --  C     -AA  A                 U      UU  G  CU
Stem-loop sequence CUUUGGAGCCCAUAUCUUUAUUUUCUCCGUUCUUGAUUCCAUUAUUUUCAUUAUAAUUUUCUAACAAUUUUAGAACAUAUCUUGUAUUAUUGUUUGAAAAUUAUAAUGAAAAAAAAAAAUCACGAGGCAAAAAAUAAAGAUCUAGACUCCAAGGCU