Search result

BaseInfo

ncRNA ID	novel_jre_miR324
Species	Juglans regia
Class	miRNA
Genome position	NW_017443516.1:1827784-1827892 [-]
Reference genome	wgs.5d
Source	SRR1170955;SRR1168884
Length	24
Mature sequence(if miRNA)	1 - UUUUCAAAAUGAUUGCACGGCGCU - 24
Stem-loop(if miRNA)	--CA       U               G    ----AUCCACU     AAAUUUAAU     CCGUGCA UCGUUUUGAAAAAGA UAAG           AUUAA         U     ||||||| ||||||||||||||| ||||           |||||     GGCACGU AGUAAAACUUUUUUU AUUU           AAGAG         U UCGC       U               -    AUUUAUGCCCU     UACUUUUCU
Stem-loop sequence	CACCGUGCAUUCGUUUUGAAAAAGAGUAAGAUCCACUAUUAAAAAUUUAAUUUUCUUUUCAUGAGAAUCCCGUAUUUAUUUAUUUUUUUCAAAAUGAUUGCACGGCGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018989745.1	ncRNA:24   UCGCGGCACGUUAGUAAAACUUUU   1   ||=|=|*||||||||||||||||| targets:1395   AGUGUCAUGCAAUCAUUUUGAAAA   1418 Target Full Sequence	1.0	PREDICTED: Juglans regia probable uridine nucleosidase 2 (LOC109009305), mRNA	NA	coding protein	psRNATarget
XM_018969255.1	ncRNA:24   UCGCGGCACGUUAGUAAAACUUUU   1   |||||||||||=|||||||||||| targets:1915   AGCGCCGUGCAGUCAUUUUGAAAA   1938 Target Full Sequence	1.5	PREDICTED: Juglans regia CTP synthase-like (LOC108994151), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018994005.1	ncRNA:24   UCGCGGCACGUUAGUAAAACUUUU   1   |*|*=||*|=|||||||||||||| targets:1005   AACAUCGCGUAAUCAUUUUGAAAA   1028 Target Full Sequence	2.0	PREDICTED: Juglans regia dnAJ-like protein slr0093 (LOC109012397), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018994004.1	ncRNA:24   UCGCGGCACGUUAGUAAAACUUUU   1   |*|*=||*|=|||||||||||||| targets:1327   AACAUCGCGUAAUCAUUUUGAAAA   1350 Target Full Sequence	2.0	PREDICTED: Juglans regia dnAJ-like protein slr0093 (LOC109012397), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018968875.1	ncRNA:24   UCGCGGCACGUUAGUAAAACUUUU   1   |*****|||||||||||||||=|| targets:80   AUACAAGUGCAAUCAUUUUGAGAA   103 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC108993841 (LOC108993841), mRNA	NA	coding protein	psRNATarget
XM_018987905.1	ncRNA:24   UCGCGGCACGUUAGUAAAACUUUU   1   |*****|||||||||||||||=|| targets:89   AUACAAGUGCAAUCAUUUUGAGAA   112 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC109007985 (LOC109007985), mRNA	NA	coding protein	psRNATarget