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BaseInfo

ncRNA ID novel_jre_miR312
Species Juglans regia
Class miRNA
Genome position NW_017443251.1:286200-286305 [+]
Reference genome wgs.5d
Source SRR1170955
Length 23
Mature sequence(if miRNA) 84 - UAAGGAUGAUGAGUAGAAUAACU - 106
Stem-loop(if miRNA) --AA   A           UC           CCUAUUUUUAUUAUUAAUCUU
    AUU UACUCAUCAUU  UACACCACACA                     U
    ||| |||||||||||  |||||||||||
    UAA AUGAGUAGUAG  AUGUGGUGUGU                     U
UCAA   G           GA           AUACUAUUCUCUUUUUUUUAU
Stem-loop sequence AAAUUAUACUCAUCAUUUCUACACCACACACCUAUUUUUAUUAUUAAUCUUUUUAUUUUUUUUCUCUUAUCAUAUGUGUGGUGUAAGGAUGAUGAGUAGAAUAACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018964604.1
ncRNA:23   UCAAUAAGAUGAGUAGUAGGAAU   1
  |||*|||||||||||||||||*|
targets:1938   AGUAAUUCUACUCAUCAUCCUAA   1960

1.5 PREDICTED: Juglans regia sugar carrier protein C (LOC108990598), mRNA NA coding protein psRNATarget
XM_018993997.1
ncRNA:23   UCAAUAAGAUGAGUAGUAGGAAU   1
  |***||||||||||||||*||||
targets:3510   AUGAAUUCUACUCAUCAUACUUA   3532

1.5 PREDICTED: Juglans regia calcium-transporting ATPase 2, plasma membrane-type-like (LOC109012392), transcript variant X3, mRNA NA coding protein psRNATarget
XM_019000621.1
ncRNA:23   UCAAUAAGAUGAGUAGUAGGAAU   1
  |***||||||||||||||*||||
targets:3510   AUGAAUUCUACUCAUCAUACUUA   3532

1.5 PREDICTED: Juglans regia calcium-transporting ATPase 2, plasma membrane-type-like (LOC109018460), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018989812.1
ncRNA:23   UCAAUAAGAUGAGUAGUAGGAAU   1
  |***||||||||||||||*||||
targets:3510   AUGAAUUCUACUCAUCAUACUUA   3532

1.5 PREDICTED: Juglans regia calcium-transporting ATPase 2, plasma membrane-type-like (LOC109009360), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018993996.1
ncRNA:23   UCAAUAAGAUGAGUAGUAGGAAU   1
  |***||||||||||||||*||||
targets:3606   AUGAAUUCUACUCAUCAUACUUA   3628

1.5 PREDICTED: Juglans regia calcium-transporting ATPase 2, plasma membrane-type-like (LOC109012392), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018989811.1
ncRNA:23   UCAAUAAGAUGAGUAGUAGGAAU   1
  |***||||||||||||||*||||
targets:3606   AUGAAUUCUACUCAUCAUACUUA   3628

1.5 PREDICTED: Juglans regia calcium-transporting ATPase 2, plasma membrane-type-like (LOC109009360), transcript variant X1, mRNA NA coding protein psRNATarget
XM_019000620.1
ncRNA:23   UCAAUAAGAUGAGUAGUAGGAAU   1
  |***||||||||||||||*||||
targets:3606   AUGAAUUCUACUCAUCAUACUUA   3628

1.5 PREDICTED: Juglans regia calcium-transporting ATPase 2, plasma membrane-type-like (LOC109018460), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018993998.1
ncRNA:23   UCAAUAAGAUGAGUAGUAGGAAU   1
  |***||||||||||||||*||||
targets:3745   AUGAAUUCUACUCAUCAUACUUA   3767

1.5 PREDICTED: Juglans regia calcium-transporting ATPase 2, plasma membrane-type-like (LOC109012392), transcript variant X4, mRNA NA coding protein psRNATarget
XM_018993995.1
ncRNA:23   UCAAUAAGAUGAGUAGUAGGAAU   1
  |***||||||||||||||*||||
targets:3773   AUGAAUUCUACUCAUCAUACUUA   3795

1.5 PREDICTED: Juglans regia calcium-transporting ATPase 2, plasma membrane-type-like (LOC109012392), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018982556.1
ncRNA:23   UCAAUAAGAUGAGUAGUAGGAAU   1
  ||||*|||||=||||||||||||
targets:315   AGUUCUUCUAUUCAUCAUCCUUA   337

2.5 PREDICTED: Juglans regia gamma-glutamyltranspeptidase 2-like (LOC109004128), mRNA NA coding protein psRNATarget
XM_018982574.1
ncRNA:23   UCAAUAAGAUGAGUAGUAGGAAU   1
  ||||*|||||=||||||||||||
targets:2097   AGUUCUUCUAUUCAUCAUCCUUA   2119

2.5 PREDICTED: Juglans regia gamma-glutamyltranspeptidase 1 (LOC109004134), mRNA NA coding protein psRNATarget
XM_018990814.1
ncRNA:23   UCAAUAAGAUGAGUAGUAGGAAU   1
  |||*|||=||||||||||=||||
targets:1291   AGUCAUUUUACUCAUCAUUCUUA   1313

2.5 PREDICTED: Juglans regia CASP-like protein 2A1 (LOC109010097), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018990813.1
ncRNA:23   UCAAUAAGAUGAGUAGUAGGAAU   1
  |||*|||=||||||||||=||||
targets:1337   AGUCAUUUUACUCAUCAUUCUUA   1359

2.5 PREDICTED: Juglans regia CASP-like protein 2A1 (LOC109010097), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018989205.1
ncRNA:23   UCAAUAAGAUGAGUAGUAGGAAU   1
  ***|||*|||=||||||||||||
targets:1131   UAAUAUGCUAUUCAUCAUCCUUA   1153

2.5 PREDICTED: Juglans regia WD repeat-containing protein VIP3 (LOC109008916), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018998410.1
ncRNA:23   UCAAUAAGAUGAGUAGUAGGAAU   1
  ||*||||=*|||||||||||||=
targets:816   AGAUAUUUGACUCAUCAUCCUUG   838

3.0 PREDICTED: Juglans regia oxysterol-binding protein-related protein 4B-like (LOC109015922), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018998480.1
ncRNA:23   UCAAUAAGAUGAGUAGUAGGAAU   1
  ||*||||=*|||||||||||||=
targets:831   AGAUAUUUGACUCAUCAUCCUUG   853

3.0 PREDICTED: Juglans regia oxysterol-binding protein-related protein 4B-like (LOC109015922), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018998203.1
ncRNA:23   UCAAUAAGAUGAGUAGUAGGAAU   1
  ||*||||=*|||||||||||||=
targets:763   AGAUAUUUGACUCAUCAUCCUUG   785

3.0 PREDICTED: Juglans regia oxysterol-binding protein-related protein 4B-like (LOC109015707), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018998313.1
ncRNA:23   UCAAUAAGAUGAGUAGUAGGAAU   1
  ||*||||=*|||||||||||||=
targets:808   AGAUAUUUGACUCAUCAUCCUUG   830

3.0 PREDICTED: Juglans regia oxysterol-binding protein-related protein 4B-like (LOC109015707), transcript variant X3, mRNA NA coding protein psRNATarget
XM_018998260.1
ncRNA:23   UCAAUAAGAUGAGUAGUAGGAAU   1
  ||*||||=*|||||||||||||=
targets:819   AGAUAUUUGACUCAUCAUCCUUG   841

3.0 PREDICTED: Juglans regia oxysterol-binding protein-related protein 4B-like (LOC109015707), transcript variant X2, mRNA NA coding protein psRNATarget
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