Search result

BaseInfo

ncRNA ID	novel_jre_miR311
Species	Juglans regia
Class	miRNA
Genome position	NW_017442828.1:24727-24835 [-]
Reference genome	wgs.5d
Source	SRR1168796;SRR1170956;SRR1170964;SRR1170970;SRR1168881
Length	24
Mature sequence(if miRNA)	1 - UUUCAAAGUGAUUGCACGGCACUU - 24
Stem-loop(if miRNA)	--AC      A                ---------- UA  GU    -UAUU    CAU     GCCGUG AGUCGCUUUGAAAAAA          A  GG  CUAU     AAAA   U     |||||| ||||||||||||||||          |  ||  ||||     ||||     CGGCAC UUAGUGAAACUUUUUU          U  CC  GGUG     UUUU   A UUCA      G                CACUUAUUUA GC  UG    UACUU    AUU
Stem-loop sequence	ACGCCGUGAAGUCGCUUUGAAAAAAAUAGGGUCUAUUAUUAAAACAUUAUUAUUUUUUCAUGUGGGUCCCGUAUUUAUUCACUUUUUUCAAAGUGAUUGCACGGCACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018994468.1	ncRNA:24   UUCACGGCACGUUAGUGAAACUUU   1   ||||*|||||||=||||||||||| targets:1452   AAGUACCGUGCAGUCACUUUGAAA   1475 Target Full Sequence	1.5	PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC109012694), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018952930.1	ncRNA:24   UUCACGGCACGUUAGUGAAACUUU   1   |||*|||*||||=||||||||||| targets:3183   AAGCGCCUUGCAGUCACUUUGAAA   3206 Target Full Sequence	2.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018952929.1	ncRNA:24   UUCACGGCACGUUAGUGAAACUUU   1   |||*|||*||||=||||||||||| targets:3186   AAGCGCCUUGCAGUCACUUUGAAA   3209 Target Full Sequence	2.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X1, mRNA	NA	coding protein	psRNATarget