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BaseInfo

ncRNA ID	novel_jre_miR308
Species	Juglans regia
Class	miRNA
Genome position	NW_017443166.1:27768-27883 [+]
Reference genome	wgs.5d
Source	SRR1170955
Length	24
Mature sequence(if miRNA)	93 - AAUGAUAUGUUUUUAAGUGGGUGU - 116
Stem-loop(if miRNA)	--        U            G     AUUUUUAUCAU    UAUUCAUAAACAUGUCUG   ACUCACUU AAAAACAUGUCA UUUAC           AUUU                  G   |||||||| |||||||||||| |||||           ||||   UGGGUGAA UUUUUGUAUAGU AAAUG           AAUG                  A UG        -            A     -------AAAA    AGUGCAUUAUUUUUACUA
Stem-loop sequence	ACUCACUUUAAAAACAUGUCAGUUUACAUUUUUAUCAUAUUUUAUUCAUAAACAUGUCUGGAAUCAUUUUUAUUACGUGAGUAAAAAAGUAAAAUGAUAUGUUUUUAAGUGGGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018995636.1	ncRNA:24   UGUGGGUGAAUUUUUGUAUAGUAA   1   |=|==||=||||||||||=||||| targets:1204   AUAUUCAUUUAAAAACAUGUCAUU   1227 Target Full Sequence	2.5	PREDICTED: Juglans regia 33 kDa ribonucleoprotein, chloroplastic (LOC109013517), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018995634.1	ncRNA:24   UGUGGGUGAAUUUUUGUAUAGUAA   1   |=|==||=||||||||||=||||| targets:1278   AUAUUCAUUUAAAAACAUGUCAUU   1301 Target Full Sequence	2.5	PREDICTED: Juglans regia 33 kDa ribonucleoprotein, chloroplastic (LOC109013517), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018953144.1	ncRNA:24   UGUGGG-UGAAUUUUUGUAUAGUAA   1   =|||||-||*||||||||||||||| targets:152   GCACCCUACCUAAAAACAUAUCAUU   176 Target Full Sequence	3.0	PREDICTED: Juglans regia V-type proton ATPase subunit G1-like (LOC108981892), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018953146.1	ncRNA:24   UGUGGG-UGAAUUUUUGUAUAGUAA   1   =|||||-||*||||||||||||||| targets:152   GCACCCUACCUAAAAACAUAUCAUU   176 Target Full Sequence	3.0	PREDICTED: Juglans regia V-type proton ATPase subunit G1-like (LOC108981892), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018953139.1	ncRNA:24   UGUGGG-UGAAUUUUUGUAUAGUAA   1   =|||||-||*||||||||||||||| targets:152   GCACCCUACCUAAAAACAUAUCAUU   176 Target Full Sequence	3.0	PREDICTED: Juglans regia V-type proton ATPase subunit G1-like (LOC108981892), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018953143.1	ncRNA:24   UGUGGG-UGAAUUUUUGUAUAGUAA   1   =|||||-||*||||||||||||||| targets:152   GCACCCUACCUAAAAACAUAUCAUU   176 Target Full Sequence	3.0	PREDICTED: Juglans regia V-type proton ATPase subunit G1-like (LOC108981892), transcript variant X3, mRNA	NA	coding protein	psRNATarget