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BaseInfo

ncRNA ID	novel_jre_miR299
Species	Juglans regia
Class	miRNA
Genome position	NW_017442819.1:75371-75454 [+]
Reference genome	wgs.5d
Source	SRR1170955;SRR1170960;SRR1170965;SRR1170966;SRR1170969;SRR1170970;SRR1168881;SRR1168883;SRR1168884;SRR1168886
Length	21
Mature sequence(if miRNA)	1 - UUGACAGAAGACAGAGAGCAC - 21
Stem-loop(if miRNA)	--        A  C           -   AA     C   GG   UUGACAGA GA AGAGAGCACAA CAG  CAUGC CAA  G   |||||||| || ||||||||||| |||  ||||| |||  A   GACUGUCU CU UCUCUCGUGUU GUC  GUAUG GUU  G AC        C  U           C   GA     U   AG
Stem-loop sequence	UUGACAGAAGACAGAGAGCACAACAGAACAUGCCCAAGGGAGGAUUGUGUAUGAGCUGCUUGUGCUCUCUUUCCUCUGUCAGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018956568.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||| targets:1003   GUGCUCUCUAUCUUCUGUCAA   1023 Target Full Sequence	1.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 16 (LOC108984564), mRNA	NA	coding protein	psRNATarget
XM_018953001.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||| targets:1134   GUGCUCUCUCUCUUCUGUCAA   1154 Target Full Sequence	1.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 9 (LOC108981756), mRNA	NA	coding protein	psRNATarget
XM_018988079.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||| targets:1130   GUGCUCUCUCUCUUCUGUCAA   1150 Target Full Sequence	1.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 9 (LOC109008101), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018988077.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||| targets:1170   GUGCUCUCUCUCUUCUGUCAA   1190 Target Full Sequence	1.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 9 (LOC109008101), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018981230.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||| targets:1177   GUGCUCUCUCUCUUCUGUCAA   1197 Target Full Sequence	1.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 12 (LOC109003190), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_018981225.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||| targets:1325   GUGCUCUCUCUCUUCUGUCAA   1345 Target Full Sequence	1.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 12 (LOC109003190), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018981224.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||| targets:1387   GUGCUCUCUCUCUUCUGUCAA   1407 Target Full Sequence	1.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 12 (LOC109003190), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018981227.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||| targets:1407   GUGCUCUCUCUCUUCUGUCAA   1427 Target Full Sequence	1.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 12 (LOC109003190), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018981226.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||| targets:1469   GUGCUCUCUCUCUUCUGUCAA   1489 Target Full Sequence	1.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 12 (LOC109003190), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018981229.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||| targets:1534   GUGCUCUCUCUCUUCUGUCAA   1554 Target Full Sequence	1.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 12 (LOC109003190), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018981228.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||| targets:1559   GUGCUCUCUCUCUUCUGUCAA   1579 Target Full Sequence	1.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 12 (LOC109003190), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_019002548.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   **|||||||*||||||||||| targets:752   UGGCUCUCUAUCUUCUGUCAA   772 Target Full Sequence	1.5	PREDICTED: Juglans regia squamosa promoter-binding protein 1 (LOC109020137), mRNA	NA	coding protein	psRNATarget
XM_018962918.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||= targets:1222   GUGCUCUCUCUCUUCUGUCAG   1242 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 6 (LOC108989354), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_018962916.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||= targets:1231   GUGCUCUCUCUCUUCUGUCAG   1251 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 6 (LOC108989354), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018962915.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||= targets:1261   GUGCUCUCUCUCUUCUGUCAG   1281 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 6 (LOC108989354), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018962914.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||= targets:1270   GUGCUCUCUCUCUUCUGUCAG   1290 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 6 (LOC108989354), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018962917.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||= targets:1666   GUGCUCUCUCUCUUCUGUCAG   1686 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 6 (LOC108989354), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018962922.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||= targets:1754   GUGCUCUCUCUCUUCUGUCAG   1774 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 6 (LOC108989354), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_018996854.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||= targets:1363   GUGCUCUCUCUCUUCUGUCAG   1383 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 6 (LOC109014393), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018996853.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||= targets:1514   GUGCUCUCUCUCUUCUGUCAG   1534 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 6 (LOC109014393), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018962919.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||= targets:1754   GUGCUCUCUCUCUUCUGUCAG   1774 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 6 (LOC108989354), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018996852.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||= targets:1687   GUGCUCUCUCUCUUCUGUCAG   1707 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 6 (LOC109014393), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018951488.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:787   GUGCUCUCUCUCUUCUGUCAU   807 Target Full Sequence	2.5	PREDICTED: Juglans regia teosinte glume architecture 1-like (LOC108980544), mRNA	NA	coding protein	psRNATarget
XM_018960809.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1143   GUGCUCUCUCUCUUCUGUCAU   1163 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 7 (LOC108987797), mRNA	NA	coding protein	psRNATarget
XM_018981252.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1243   GUGCUCUCUCUCUUCUGUCAU   1263 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 18 (LOC109003206), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_018981251.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1248   GUGCUCUCUCUCUUCUGUCAU   1268 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 18 (LOC109003206), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018981254.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1250   GUGCUCUCUCUCUUCUGUCAU   1270 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 18 (LOC109003206), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_018981253.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1255   GUGCUCUCUCUCUUCUGUCAU   1275 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 18 (LOC109003206), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018981250.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1316   GUGCUCUCUCUCUUCUGUCAU   1336 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 18 (LOC109003206), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018981248.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1319   GUGCUCUCUCUCUUCUGUCAU   1339 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 18 (LOC109003206), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018981249.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1345   GUGCUCUCUCUCUUCUGUCAU   1365 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 18 (LOC109003206), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018969629.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1368   GUGCUCUCUCUCUUCUGUCAU   1388 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 13A (LOC108994418), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018973423.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1306   GUGCUCUCUCUCUUCUGUCAU   1326 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 13A (LOC108997158), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018998557.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1371   GUGCUCUCUCUCUUCUGUCAU   1391 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 7 (LOC109016096), mRNA	NA	coding protein	psRNATarget
XM_018969627.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1387   GUGCUCUCUCUCUUCUGUCAU   1407 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 13A (LOC108994418), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018969628.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1396   GUGCUCUCUCUCUUCUGUCAU   1416 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 13A (LOC108994418), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018969626.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1414   GUGCUCUCUCUCUUCUGUCAU   1434 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 13A (LOC108994418), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018973345.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1443   GUGCUCUCUCUCUUCUGUCAU   1463 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 13A (LOC108997158), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018973560.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1509   GUGCUCUCUCUCUUCUGUCAU   1529 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 13A (LOC108997158), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018973493.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1536   GUGCUCUCUCUCUUCUGUCAU   1556 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 13A (LOC108997158), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018969275.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1692   GUGCUCUCUCUCUUCUGUCAU   1712 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 6 (LOC108994158), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018969274.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1639   GUGCUCUCUCUCUUCUGUCAU   1659 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 6 (LOC108994158), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_018969271.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1663   GUGCUCUCUCUCUUCUGUCAU   1683 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 6 (LOC108994158), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018969272.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1668   GUGCUCUCUCUCUUCUGUCAU   1688 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 6 (LOC108994158), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018969273.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1680   GUGCUCUCUCUCUUCUGUCAU   1700 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 6 (LOC108994158), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018969270.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |||||||||*||||||||||* targets:1690   GUGCUCUCUCUCUUCUGUCAU   1710 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 6 (LOC108994158), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018995237.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   *||||||||*||||||||||= targets:752   AUGCUCUCUCUCUUCUGUCAG   772 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 3 (LOC109013222), mRNA	NA	coding protein	psRNATarget
XM_018959329.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   *||||||||*||||||||||* targets:680   AUGCUCUCUCUCUUCUGUCAU   700 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding protein 1-like (LOC108986645), mRNA	NA	coding protein	psRNATarget
XM_018959875.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   *||||||||*||||||||||* targets:1038   AUGCUCUCUAUCUUCUGUCAU   1058 Target Full Sequence	2.5	PREDICTED: Juglans regia teosinte glume architecture 1-like (LOC108987035), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018959874.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   *||||||||*||||||||||* targets:1153   AUGCUCUCUAUCUUCUGUCAU   1173 Target Full Sequence	2.5	PREDICTED: Juglans regia teosinte glume architecture 1-like (LOC108987035), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018983458.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   *||||||||*||||||||||* targets:1604   AUGCUCUCUCUCUUCUGUCAU   1624 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 18 (LOC109004775), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018983484.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   *||||||||*||||||||||* targets:1663   AUGCUCUCUCUCUUCUGUCAU   1683 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 18 (LOC109004775), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_018983450.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   *||||||||*||||||||||* targets:1675   AUGCUCUCUCUCUUCUGUCAU   1695 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 18 (LOC109004775), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018983476.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   *||||||||*||||||||||* targets:1698   AUGCUCUCUCUCUUCUGUCAU   1718 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 18 (LOC109004775), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018983466.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   *||||||||*||||||||||* targets:1710   AUGCUCUCUCUCUUCUGUCAU   1730 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding-like protein 18 (LOC109004775), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019003304.1	ncRNA:21   CACGAGAGACAGAAGACAGUU   1   |*|||||||*||||||||||= targets:722   GGGCUCUCUCUCUUCUGUCAG   742 Target Full Sequence	2.5	PREDICTED: Juglans regia squamosa promoter-binding protein 1-like (LOC109020782), mRNA	NA	coding protein	psRNATarget