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BaseInfo

ncRNA ID novel_jre_miR293
Species Juglans regia
Class miRNA
Genome position NW_017442293.1:128531-128617 [+]
Reference genome wgs.5d
Source SRR1170955
Length 24
Mature sequence(if miRNA) 1 - AUCGAGCGAACCACUCUGGAAGGU - 24
Stem-loop(if miRNA) --A       -    AC  UG  -      C      ---     AC
   UCGAGCG AACC  UC  GA AGGUUC GCUCGA   GCGCU  G
   ||||||| ||||  ||  || |||||| ||||||   |||||
   AGUUCGC UUGG  AG  CU UCCAAG CGAGCU   CGCGA  U
GCG       C    -A  GU  C      -      ACA     GC
Stem-loop sequence AUCGAGCGAACCACUCUGGAAGGUUCCGCUCGAGCGCUACGUCGAGCGCACAUCGAGCGAACCUCUCUGGAAGGUUCCGCUUGAGCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018977967.1
ncRNA:24   UGGA----------AGGUCUCACCAAGCGAGCUA   1
  ||||----------||=|*=||||||||||||||
targets:319   ACCUGGGAUUAAGGUCUAUGGUGGUUCGCUCGAU   352

3.0 PREDICTED: Juglans regia hydroxyacylglutathione hydrolase cytoplasmic (LOC109000916), mRNA NA coding protein psRNATarget