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BaseInfo

ncRNA ID	novel_jre_miR271
Species	Juglans regia
Class	miRNA
Genome position	NW_017436697.1:20032-20141 [+]
Reference genome	wgs.5d
Source	SRR1170955;SRR1168883
Length	24
Mature sequence(if miRNA)	87 - UUUCAAAGCGACUGUACGACGCUU - 110
Stem-loop(if miRNA)	--  AC                C          AUCCACUAUUA AAAAUUAAUUUA   GU  CGUAUAGUCGUUUUGA AAAAAGUGGA           A            U   ||  |||||||||||||||| ||||||||||           |            U   CG  GCAUGUCAGCGAAACU UUUUUCACUU           C            U UU  CA                -          ----AAUUAUG CCUAGAUUUAUU
Stem-loop sequence	GUACCGUAUAGUCGUUUUGACAAAAAGUGGAAUCCACUAUUAAAAAAUUAAUUUAUUUUUAUUUAGAUCCCGUAUUAAUUCACUUUUUUCAAAGCGACUGUACGACGCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_019004598.1	ncRNA:24   UUCGCAGCAUGUCAGCGAAACUUU   1   |||||||*|=|||||||||||||| targets:1272   AAGCGUCAUGCAGUCGCUUUGAAA   1295 Target Full Sequence	2.0	PREDICTED: Juglans regia branched-chain-amino-acid aminotransferase 2, chloroplastic-like (LOC109021870), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018980788.1	ncRNA:24   UUCGCAGCAUGUCAGCGAAACUUU   1   |||||*|||=|||||||||||||| targets:1608   AAGCGCCGUGCAGUCGCUUUGAAA   1631 Target Full Sequence	2.0	PREDICTED: Juglans regia histone-lysine N-methyltransferase ATXR2-like (LOC109002870), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_019004597.1	ncRNA:24   UUCGCAGCAUGUCAGCGAAACUUU   1   |||||||*|=|||||||||||||| targets:1391   AAGCGUCAUGCAGUCGCUUUGAAA   1414 Target Full Sequence	2.0	PREDICTED: Juglans regia branched-chain-amino-acid aminotransferase 2, chloroplastic-like (LOC109021870), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018992483.1	ncRNA:24   UUCGCAGCAUGUCAGCGAAACUUU   1   |||||||*|==||||||||||||| targets:2411   AAGCGUCUUGUAGUCGCUUUGAAA   2434 Target Full Sequence	3.0	PREDICTED: Juglans regia elongation factor G-2, chloroplastic (LOC109011319), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018970092.1	ncRNA:24   UUCGCAGCAUGUCAGCGAAACUUU   1   ||*||*|*|=|||||||||||||| targets:3745   AAACGCCUUGCAGUCGCUUUGAAA   3768 Target Full Sequence	3.0	PREDICTED: Juglans regia translation initiation factor eIF-2B subunit epsilon (LOC108994766), transcript variant X6, mRNA	NA	coding protein	psRNATarget