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BaseInfo

ncRNA ID novel_jre_miR268
Species Juglans regia
Class miRNA
Genome position NW_017436172.1:16025-16127 [+]
Reference genome wgs.5d
Source SRR1170955;SRR1170958;SRR1170965;SRR1170966;SRR1170970;SRR1168883;SRR1168884
Length 24
Mature sequence(if miRNA) 80 - CAUGUUGAUGGUAUGUGGUGUAGG - 103
Stem-loop(if miRNA) --         C      C     A    -   CA    U  GAU    AUU
  UACACUACA ACCAUC ACAUG CAUA UUU  UUUG AA   UCAA   U
  ||||||||| |||||| ||||| |||| |||  |||| ||   ||||   U
  AUGUGGUGU UGGUAG UGUAC GUAU AAA  AAAC UU   AGUU   A
GG         A      U     C    U   UC    C  -AU    AAA
Stem-loop sequence UACACUACACACCAUCCACAUGACAUAUUUCAUUUGUAAGAUUCAAAUUUUAAAAUUGAUAUUCCAAACUAAAUUAUGCCAUGUUGAUGGUAUGUGGUGUAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018968245.1
ncRNA:24   GGAUGU-GGUGUAUGGUAGUUGUAC   1
  **||||-|||*||||||||||||||
targets:2472   AAUACAGCCAGAUACCAUCAACAUG   2496

3.0 PREDICTED: Juglans regia uncharacterized LOC108993358 (LOC108993358), mRNA NA coding protein psRNATarget