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BaseInfo

ncRNA ID novel_jre_miR264
Species Juglans regia
Class miRNA
Genome position NW_017408349.1:782-944 [-]
Reference genome wgs.5d
Source SRR1170955;SRR1170957;SRR1170965
Length 24
Mature sequence(if miRNA) 1 - CAUUCCACGAUUGUAUGUAGCAUU - 24
Stem-loop(if miRNA) --  A   U          -           GU      A             --AAUGAAUAAAUA  AGACUCACAUUAAA
  UG UAU UGCAGUUGUG AGUGUGUAAAU  CGUACA UCGUUUUGAAAAA              UG              A
  || ||| |||||||||| |||||||||||  |||||| |||||||||||||              ||
  AC AUG AUGUUAGCAC UUACGCAUUUA  GCAUGU AGCAAAACUUUUU              UA              G
UU  G   U          C           UG      C             CUCACCCUAGAUAA  AUUUUUUAAUUAAA
Stem-loop sequence UGAUAUUUGCAGUUGUGAGUGUGUAAAUGUCGUACAAUCGUUUUGAAAAAAAUGAAUAAAUAUGAGACUCACAUUAAAAGAAAUUAAUUUUUUAAUAAUAGAUCCCACUCUUUUUCAAAACGACUGUACGGUAUUUACGCAUUCCACGAUUGUAUGUAGCAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018970092.1
ncRNA:24   UUACGAUGUAUGUUAGCACCUUAC   1
  ||||*||=|||||||||||||=||
targets:3718   AAUGAUAUAUACAAUCGUGGAGUG   3741

2.5 PREDICTED: Juglans regia translation initiation factor eIF-2B subunit epsilon (LOC108994766), transcript variant X6, mRNA NA coding protein psRNATarget