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BaseInfo

ncRNA ID novel_jre_miR259
Species Juglans regia
Class miRNA
Genome position NW_017394992.1:419-505 [-]
Reference genome wgs.5d
Source SRR1170955
Length 24
Mature sequence(if miRNA) 64 - AUCGAGCGAACCACUCUGGAAGGU - 87
Stem-loop(if miRNA) --A         -  AC  UG  -      C      ---     AC
   UCGAGCGAA CC  UC  GA AGGUUC GCUCGA   GCGCU  G
   ||||||||| ||  ||  || |||||| ||||||   |||||
   AGCUCGCUU GG  AG  CU UCCAAG CGAGCU   CGCGA  U
GCG         U  -A  GU  C      -      ACC     GC
Stem-loop sequence AUCGAGCGAACCACUCUGGAAGGUUCCGCUCGAGCGCUACGUCGAGCGCCCAUCGAGCGAACCUCUCUGGAAGGUUUCGCUCGAGCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018977967.1
ncRNA:24   UGGA----------AGGUCUCACCAAGCGAGCUA   1
  ||||----------||=|*=||||||||||||||
targets:319   ACCUGGGAUUAAGGUCUAUGGUGGUUCGCUCGAU   352

3.0 PREDICTED: Juglans regia hydroxyacylglutathione hydrolase cytoplasmic (LOC109000916), mRNA NA coding protein psRNATarget