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BaseInfo

ncRNA ID	novel_jre_miR257
Species	Juglans regia
Class	miRNA
Genome position	NW_017391505.1:21280-21447 [-]
Reference genome	wgs.5d
Source	SRR1170955
Length	24
Mature sequence(if miRNA)	145 - AAUGAUAGUUGCAGUUGUGAGUGU - 168
Stem-loop(if miRNA)	--    AUAGU      UG -     UA    U   -------------AUACAAUCAC    - AAAAAUUAAAUAAAUACGAGACUCAC   AAUG     UGCAGU  U GAGUG  CAGG GUC                       UUUA A                          A   ||||     ||||||  | |||||  |||| |||                       |||| |                          U   UUAC     AUGUCA  A UUCAC  GUUU CGG                       CUCU A                          G CA    GAUGU      GU A     GC    U   CACAUUAACGAAACUUUUUAUAA    A GUGAUAAUUUUUUUAUUAAAAUAAAA
Stem-loop sequence	AAUGAUAGUUGCAGUUGUGAGUGUACAGGUGUCAUACAAUCACUUUAAAAAAAUUAAAUAAAUACGAGACUCACAUGAAAAUAAAAUUAUUUUUUUAAUAGUGAAUCUCAAUAUUUUUCAAAGCAAUUACACGGCUUUUGCGCACUUAAUGACUGUAUGUAGCAUUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018970092.1	ncRNA:24   UGUGAGUGUUGACGUUGAUAGUAA   1   ||=|*||||||||||||||||||| targets:3860   ACGCACACAACUGCAACUAUCAUU   3883 Target Full Sequence	0.0	PREDICTED: Juglans regia translation initiation factor eIF-2B subunit epsilon (LOC108994766), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018969255.1	ncRNA:24   UGUGAGUGUUGACGUUGAUAGUAA   1   ||||||||||=||||||||||||| targets:1991   ACACUCACAAUUGCAACUAUCAUU   2014 Target Full Sequence	1.0	PREDICTED: Juglans regia CTP synthase-like (LOC108994151), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018952930.1	ncRNA:24   UGUGAGUGUUGACGUUGAUAGUAA   1   =||=||||=||||||||||||||| targets:3297   GCAUUCACGACUGCAACUAUCAUU   3320 Target Full Sequence	1.0	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018952929.1	ncRNA:24   UGUGAGUGUUGACGUUGAUAGUAA   1   =||=||||=||||||||||||||| targets:3300   GCAUUCACGACUGCAACUAUCAUU   3323 Target Full Sequence	1.0	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019004598.1	ncRNA:24   UGUGAGUGUUGACGUUGAUAGUAA   1   |||||||||||||=|||||||||| targets:1384   ACACUCACAACUGUAACUAUCAUU   1407 Target Full Sequence	1.5	PREDICTED: Juglans regia branched-chain-amino-acid aminotransferase 2, chloroplastic-like (LOC109021870), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019004597.1	ncRNA:24   UGUGAGUGUUGACGUUGAUAGUAA   1   |||||||||||||=|||||||||| targets:1503   ACACUCACAACUGUAACUAUCAUU   1526 Target Full Sequence	1.5	PREDICTED: Juglans regia branched-chain-amino-acid aminotransferase 2, chloroplastic-like (LOC109021870), transcript variant X1, mRNA	NA	coding protein	psRNATarget