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BaseInfo

ncRNA ID novel_jre_miR255
Species Juglans regia
Class miRNA
Genome position NW_017389900.1:35570-35635 [+]
Reference genome wgs.5d
Source SRR1170955;SRR1170961;SRR1170962;SRR1168880;SRR1170966;SRR1170968;SRR1168881;SRR1168883
Length 21
Mature sequence(if miRNA) 1 - UAAUCUGCAUCCUGAGGUUUA - 21
Stem-loop(if miRNA) --        A   UG   U      C  UAUC
  UAAUCUGC UCC  AGG UUAGAU AC    U
  |||||||| |||  ||| |||||| ||    U
  AUUAGACG AGG  UCC GAUCUA UG    U
CU        A   GU   U      -  UUGC
Stem-loop sequence UAAUCUGCAUCCUGAGGUUUAGAUCACUAUCUUUCGUUGUAUCUAGUCCUUGGGAAGCAGAUUAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019004626.1
ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1
  |=|||||||||||||||||||
targets:389   UGAACCUCAGGAUGCAGAUUA   409

0.0 PREDICTED: Juglans regia F-box/kelch-repeat protein At3g27150 (LOC109021890), transcript variant X2, mRNA NA coding protein psRNATarget
XM_019004624.1
ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1
  |=|||||||||||||||||||
targets:656   UGAACCUCAGGAUGCAGAUUA   676

0.0 PREDICTED: Juglans regia F-box/kelch-repeat protein At3g27150 (LOC109021890), transcript variant X1, mRNA NA coding protein psRNATarget