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BaseInfo

ncRNA ID	novel_jre_miR250
Species	Juglans regia
Class	miRNA
Genome position	NW_017389835.1:4581-4738 [-]
Reference genome	wgs.5d
Source	SRR1170955
Length	22
Mature sequence(if miRNA)	1 - UAUUCCACGACUGUAUGUAGCA - 22
Stem-loop(if miRNA)	--A   U          -    UA                     A     ---A   AUAUAUAUGGGACCCACAUGAAA    UAC UGCAGUCGUG AGUG  CAAACGCCGUGCAGUCGUUUU AAAAA    UAU                       A    ||| |||||||||| ||||  ||||||||||||||||||||| |||||    |||    AUG AUGUCAGCAC UUAU  GUUUGUGGCACGUUAGCGAAA UUUUU    CCC                       G ACG   U          C    GC                     C     CUCA   CAGAUGAUAAUUUUUUAAUUAAA
Stem-loop sequence	AUACUUGCAGUCGUGAGUGUACAAACGCCGUGCAGUCGUUUUAAAAAAAUAUAUAUAUAUGGGACCCACAUGAAAAGAAAUUAAUUUUUUAAUAGUAGACCCCACUCUUUUUCAAAGCGAUUGCACGGUGUUUGCGUAUUCCACGACUGUAUGUAGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018960739.1	ncRNA:22   ACGAUGUAUGUCAGCACCUUAU   1   |||||||||||||||||||=|| targets:1145   UGCUACAUACAGUCGUGGAGUA   1166 Target Full Sequence	1.5	PREDICTED: Juglans regia uncharacterized protein At1g28695-like (LOC108987746), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018983529.1	ncRNA:22   ACGAUGUAUGUCAGCACCUUAU   1   |||||||||||||||||*|||| targets:2302   UGCUACAUACAGUCGUGAAAUA   2323 Target Full Sequence	1.5	PREDICTED: Juglans regia UDP-sugar pyrophosphorylase-like (LOC109004826), mRNA	NA	coding protein	psRNATarget
XM_018989147.1	ncRNA:22   ACGAUGUAUGUCAGCACCUUAU   1   |*|||||||=|||||||||||| targets:2719   UUCUACAUAUAGUCGUGGAAUA   2740 Target Full Sequence	1.5	PREDICTED: Juglans regia U-box domain-containing protein 35-like (LOC109008882), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018989146.1	ncRNA:22   ACGAUGUAUGUCAGCACCUUAU   1   |*|||||||=|||||||||||| targets:2723   UUCUACAUAUAGUCGUGGAAUA   2744 Target Full Sequence	1.5	PREDICTED: Juglans regia U-box domain-containing protein 35-like (LOC109008882), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018989145.1	ncRNA:22   ACGAUGUAUGUCAGCACCUUAU   1   |*|||||||=|||||||||||| targets:2741   UUCUACAUAUAGUCGUGGAAUA   2762 Target Full Sequence	1.5	PREDICTED: Juglans regia U-box domain-containing protein 35-like (LOC109008882), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018994468.1	ncRNA:22   ACGAUGUAUGUCAGCACCUUAU   1   |||||||||||||||||||=|= targets:1427   UGCUACAUACAGUCGUGGAGUG   1448 Target Full Sequence	2.5	PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC109012694), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018967640.1	ncRNA:22   ACGAUGUAUGUCAGCACCUUAU   1   ||=||||||=|||||||||||= targets:2072   UGUUACAUAUAGUCGUGGAAUG   2093 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC108992921 (LOC108992921), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018967641.1	ncRNA:22   ACGAUGUAUGUCAGCACCUUAU   1   ||=||||||=|||||||||||= targets:2122   UGUUACAUAUAGUCGUGGAAUG   2143 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC108992921 (LOC108992921), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018974968.1	ncRNA:22   ACGAUGUAUGUCAGCACCUUAU   1   ||=||||||||||||||*|||= targets:1092   UGUUACAUACAGUCGUGAAAUG   1113 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC108998416 (LOC108998416), mRNA	NA	coding protein	psRNATarget