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BaseInfo

ncRNA ID novel_jre_miR244
Species Juglans regia
Class miRNA
Genome position NW_017389670.1:627981-628044 [-]
Reference genome wgs.5d
Source SRR1170955
Length 24
Mature sequence(if miRNA) 1 - AUCGAGCGAACCACUCUGGAAGGU - 24
Stem-loop(if miRNA) -CAC  UG  -A     C      ---     AC
    UC  GA  GGUUC GCUCGA   GCGCU  G
    ||  ||  ||||| ||||||   |||||
    AG  CU  CCAAG CGAGCU   CGCGA  U
UGGA  GU  CA     -      ACC     GC
Stem-loop sequence CACUCUGGAAGGUUCCGCUCGAGCGCUACGUCGAGCGCCCAUCGAGCGAACCACUCUGGAAGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018977967.1
ncRNA:24   UGGA----------AGGUCUCACCAAGCGAGCUA   1
  ||||----------||=|*=||||||||||||||
targets:319   ACCUGGGAUUAAGGUCUAUGGUGGUUCGCUCGAU   352

3.0 PREDICTED: Juglans regia hydroxyacylglutathione hydrolase cytoplasmic (LOC109000916), mRNA NA coding protein psRNATarget