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BaseInfo

ncRNA ID novel_jre_miR233
Species Juglans regia
Class miRNA
Genome position NW_017389507.1:46483-46586 [-]
Reference genome wgs.5d
Source SRR1170955;SRR1170960;SRR1170964;SRR1170965;SRR1170966;SRR1170969;SRR1170970;SRR1168881
Length 21
Mature sequence(if miRNA) 1 - GGAAUCUUGAUGAUGCUGCAG - 21
Stem-loop(if miRNA) -- G                A  -   UUUU      UU G      -UGG  CC
  G AGCAUCAUCAAGAUUC CA AUC    AAGGCU  U UGGGGC    UC  U
  | |||||||||||||||| || |||    ||||||  | ||||||    ||
  C UCGUAGUAGUUCUAAG GU UAG    UUCCGG  A ACCUUG    AG  U
GA G                G  C   ---U      -C G      CUUA  CU
Stem-loop sequence GGAGCAUCAUCAAGAUUCACAAUCUUUUAAGGCUUUUGUGGGGCUGGUCCCUUUCGAAUUCGUUCCAGACGGCCUUUGAUCUGGGAAUCUUGAUGAUGCUGCAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018952291.1
ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=||||||
targets:1463   CUGCAGCAUCAUCAGGAUUCC   1483

1.5 PREDICTED: Juglans regia ethylene-responsive transcription factor RAP2-7-like (LOC108981197), mRNA NA coding protein psRNATarget
XM_018958185.1
ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=||||||
targets:1737   CUGCAGCAUCAUCAGGAUUCC   1757

1.5 PREDICTED: Juglans regia floral homeotic protein APETALA 2-like (LOC108985763), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018958184.1
ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=||||||
targets:1923   CUGCAGCAUCAUCAGGAUUCC   1943

1.5 PREDICTED: Juglans regia floral homeotic protein APETALA 2-like (LOC108985763), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018989464.1
ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=||||||
targets:1907   CUGCAGCAUCAUCAGGAUUCC   1927

1.5 PREDICTED: Juglans regia floral homeotic protein APETALA 2 (LOC109009102), transcript variant X3, mRNA NA coding protein psRNATarget
XM_018989462.1
ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=||||||
targets:1910   CUGCAGCAUCAUCAGGAUUCC   1930

1.5 PREDICTED: Juglans regia floral homeotic protein APETALA 2 (LOC109009102), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018989461.1
ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=||||||
targets:1912   CUGCAGCAUCAUCAGGAUUCC   1932

1.5 PREDICTED: Juglans regia floral homeotic protein APETALA 2 (LOC109009102), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018963352.1
ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||=
targets:1713   CUGCAGCAUCAUCAGGAUUCU   1733

2.5 PREDICTED: Juglans regia ethylene-responsive transcription factor RAP2-7 (LOC108989660), transcript variant X2, mRNA NA coding protein psRNATarget
XM_019005052.1
ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||=
targets:1803   CUGCAGCAUCAUCAGGAUUCU   1823

2.5 PREDICTED: Juglans regia ethylene-responsive transcription factor RAP2-7-like (LOC109022208), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018963351.1
ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||=
targets:1741   CUGCAGCAUCAUCAGGAUUCU   1761

2.5 PREDICTED: Juglans regia ethylene-responsive transcription factor RAP2-7 (LOC108989660), transcript variant X1, mRNA NA coding protein psRNATarget
XM_019005043.1
ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||=
targets:1848   CUGCAGCAUCAUCAGGAUUCU   1868

2.5 PREDICTED: Juglans regia ethylene-responsive transcription factor RAP2-7-like (LOC109022208), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018963354.1
ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||=
targets:1793   CUGCAGCAUCAUCAGGAUUCU   1813

2.5 PREDICTED: Juglans regia ethylene-responsive transcription factor RAP2-7 (LOC108989660), transcript variant X4, mRNA NA coding protein psRNATarget
XM_018963353.1
ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||=
targets:1838   CUGCAGCAUCAUCAGGAUUCU   1858

2.5 PREDICTED: Juglans regia ethylene-responsive transcription factor RAP2-7 (LOC108989660), transcript variant X3, mRNA NA coding protein psRNATarget
XM_018973255.1
ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1592   GUGCAGCAUCAUCAGGAUUCU   1612

2.5 PREDICTED: Juglans regia AP2-like ethylene-responsive transcription factor TOE3 (LOC108997119), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018973254.1
ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1596   GUGCAGCAUCAUCAGGAUUCU   1616

2.5 PREDICTED: Juglans regia AP2-like ethylene-responsive transcription factor TOE3 (LOC108997119), transcript variant X1, mRNA NA coding protein psRNATarget
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