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BaseInfo

ncRNA ID novel_jre_miR230
Species Juglans regia
Class miRNA
Genome position NW_017389269.1:262616-262679 [-]
Reference genome wgs.5d
Source SRR1170955;SRR1170965;SRR1170966;SRR1168883
Length 24
Mature sequence(if miRNA) 1 - AUCGAGCGAACCACUCUGGAAGGU - 24
Stem-loop(if miRNA) -UAC  UG  -A    U       ---     GC
    UC  GA  GGUU CGCUCGA   GCGCU  G
    ||  ||  |||| |||||||   |||||
    AG  CU  CCAA GCGAGCU   CGCGA  U
UGGA  GU  CA    -       ACA     GC
Stem-loop sequence UACUCUGGAAGGUUUCGCUCGAGCGCUGCGUCGAGCGCACAUCGAGCGAACCACUCUGGAAGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018977967.1
ncRNA:24   UGGA----------AGGUCUCACCAAGCGAGCUA   1
  ||||----------||=|*=||||||||||||||
targets:319   ACCUGGGAUUAAGGUCUAUGGUGGUUCGCUCGAU   352

3.0 PREDICTED: Juglans regia hydroxyacylglutathione hydrolase cytoplasmic (LOC109000916), mRNA NA coding protein psRNATarget