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BaseInfo

ncRNA ID	novel_jre_miR228
Species	Juglans regia
Class	miRNA
Genome position	NW_017389141.1:65450-65618 [+]
Reference genome	wgs.5d
Source	SRR1170955
Length	20
Mature sequence(if miRNA)	150 - UGACUGCAUGUAGUAUUACU - 169
Stem-loop(if miRNA)	--A    A   U         A     C    G   G  A    C C         -   AAGUAAAUAC   AC    -         A    AAUG UAU UGCAGUCGU GAGUG GUAA CGC GC CAAU C UUUGAAAAA AGU          GGG  UCAU AUUAAAAAA A    |||| ||| ||||||||| ||||| |||| ||| || |||| | ||||||||| |||          |||  |||| ||||||||| U    UUAU AUG ACGUCAGUA CUUAC CGUU GCG CG GUUA G AAACUUUUU UCA          CCC  GGUG UAAUUUUUU A UCA    G   U         C     A    G   A  C    A A         C   ----------   CA    A         A
Stem-loop sequence	AAAUGAUAUUUGCAGUCGUAGAGUGCGUAAGCGCGGCACAAUCCCUUUGAAAAAAGUAAGUAAAUACGGGACUCAUAUUAAAAAAAAUAAUUUUUUAAUAGUGGACCCCACUCUUUUUCAAAAGAAUUGCGCAGCGGUUGCACAUUCCAUGACUGCAUGUAGUAUUACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018952930.1	ncRNA:20   UCAUUAUGAUGUACGUCAGU   1   ||||||=|||||||=||||| targets:3153   AGUAAUGCUACAUGUAGUCA   3172 Target Full Sequence	2.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018952929.1	ncRNA:20   UCAUUAUGAUGUACGUCAGU   1   ||||||=|||||||=||||| targets:3156   AGUAAUGCUACAUGUAGUCA   3175 Target Full Sequence	2.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018957687.1	ncRNA:20   UCAUUAUGAUGUACGUCAGU   1   ||||||=|||*||||||||| targets:756   AGUAAUGCUAGAUGCAGUCA   775 Target Full Sequence	2.5	PREDICTED: Juglans regia CST complex subunit TEN1 (LOC108985399), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018957688.1	ncRNA:20   UCAUUAUGAUGUACGUCAGU   1   ||||||=|||*||||||||| targets:758   AGUAAUGCUAGAUGCAGUCA   777 Target Full Sequence	2.5	PREDICTED: Juglans regia CST complex subunit TEN1 (LOC108985399), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018957686.1	ncRNA:20   UCAUUAUGAUGUACGUCAGU   1   ||||||=|||*||||||||| targets:786   AGUAAUGCUAGAUGCAGUCA   805 Target Full Sequence	2.5	PREDICTED: Juglans regia CST complex subunit TEN1 (LOC108985399), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018974735.1	ncRNA:20   UCAUUAUGAUGUACGUCAGU   1   ||||=||||||*|||||||| targets:290   AGUAGUACUACUUGCAGUCA   309 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC108998234 (LOC108998234), mRNA	NA	coding protein	psRNATarget
XM_018992679.1	ncRNA:20   UCAUUAUGAUGUACGUCAGU   1   ||||||=||||||*|||||| targets:2248   AGUAAUGCUACAUACAGUCA   2267 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC109011462 (LOC109011462), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018992680.1	ncRNA:20   UCAUUAUGAUGUACGUCAGU   1   ||||||=||||||*|||||| targets:2368   AGUAAUGCUACAUACAGUCA   2387 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC109011462 (LOC109011462), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018992677.1	ncRNA:20   UCAUUAUGAUGUACGUCAGU   1   ||||||=||||||*|||||| targets:2508   AGUAAUGCUACAUACAGUCA   2527 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC109011462 (LOC109011462), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018992678.1	ncRNA:20   UCAUUAUGAUGUACGUCAGU   1   ||||||=||||||*|||||| targets:2706   AGUAAUGCUACAUACAGUCA   2725 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC109011462 (LOC109011462), transcript variant X2, mRNA	NA	coding protein	psRNATarget