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BaseInfo

ncRNA ID	novel_jre_miR222
Species	Juglans regia
Class	miRNA
Genome position	NW_017388961.1:19065-19247 [+]
Reference genome	wgs.5d
Source	SRR1170955;SRR1168881;SRR1168883
Length	24
Mature sequence(if miRNA)	160 - ACGGAAUUGGUUAAAUCGCUGGCU - 183
Stem-loop(if miRNA)	--UG  -   G         C  A    -UUAU   G   U    A U     AUUUCCUUUUUUUUU   GUC    -AAC    C   -  CA  ACA U     AG GAU UUGACCAAU CC UGUA     AUU UUA GGGU C AUACA               GAU   GGGG    CUCU CAA GG  GG   C U     || ||| ||||||||| || ||||     ||| ||| |||| | |||||               |||   ||||    |||| ||| ||  ||   |     UC CUA AAUUGGUUA GG AUAU     UAA AGU CCCA G UAUGU               CUG   CCCC    GAGA GUU CC  CC   G C UCGG  G   -         A  C    CCUUU   A   U    C C     ------------GCC   --U    AAAU    C   A  AG  --A G
Stem-loop sequence	UGAGGAUGUUGACCAAUCCCAUGUAUUAUAUUGUUAUGGGUACUAUACAAUUUCCUUUUUUUUUGAUGUCGGGGAACCUCUCCAAGGCAGGACACUUCGGACCGACCAUUGCAGAGUAAACCCCUGUCCCGUGUAUCGCACCCUUGAAAAUUUUCCUAUACGGAAUUGGUUAAAUCGCUGGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018963442.1	ncRNA:24   UCGGUCGCUAAAUUGGUUAAGGCA   1   |*|||||||||||||||||||||| targets:2395   ACCCAGCGAUUUAACCAAUUCCGU   2418 Target Full Sequence	0.0	PREDICTED: Juglans regia protein DETOXIFICATION 29 (LOC108989721), mRNA	NA	coding protein	psRNATarget
XM_018977937.1	ncRNA:24   UCGGUCGCUAAAUUGGUUAAGGCA   1   |||||||||||||||||=|||||| targets:1558   AGCCAGCGAUUUAACCAGUUCCGU   1581 Target Full Sequence	1.5	PREDICTED: Juglans regia RNA pseudouridine synthase 6, chloroplastic (LOC109000895), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018977936.1	ncRNA:24   UCGGUCGCUAAAUUGGUUAAGGCA   1   |||||||||||||||||=|||||| targets:1863   AGCCAGCGAUUUAACCAGUUCCGU   1886 Target Full Sequence	1.5	PREDICTED: Juglans regia RNA pseudouridine synthase 6, chloroplastic (LOC109000895), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018964732.1	ncRNA:24   UCGGUCGCUAAAUUGGUUAAGGCA   1   |||||*|||||||||||=|||||| targets:43   AGCCAACGAUUUAACCAGUUCCGU   66 Target Full Sequence	2.5	PREDICTED: Juglans regia 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic-like (LOC108990696), partial mRNA	NA	coding protein	psRNATarget