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BaseInfo

ncRNA ID novel_jre_miR220
Species Juglans regia
Class miRNA
Genome position NW_017388999.1:114495-114630 [+]
Reference genome wgs.5d
Source SRR1168887;SRR1170955;SRR1170957;SRR1168796;SRR1170960;SRR1170961;SRR1170962;SRR1170963;SRR1170964;SRR1170965;SRR1170966;SRR1170967;SRR1170968;SRR1170969;SRR1168880;SRR1170970;SRR1168881;SRR1168795;SRR1168883;SRR1168884;SRR1168886
Length 20
Mature sequence(if miRNA) 117 - UCGGACCAGGCUUCAUUCCC - 136
Stem-loop(if miRNA) --     UU      CU    GG     U   GAUGU       U   -        -----------      U
  GAAUG  GUUUGG  CGAG  CAUGU GGU     UAAGUCU UGA GGUUUUUU           GAGACU U
  |||||  ||||||  ||||  ||||| |||     ||||||| ||| ||||||||           ||||||
  CUUAC  CGGACC  GCUC  GUGUA CCG     AUUUAGA ACU CUAGAAAA           CUCUGA U
CC     UU      AG    UA     U   --AAU       C   U        AACAAAAAGAC      G
Stem-loop sequence GAAUGUUGUUUGGCUCGAGGGCAUGUUGGUGAUGUUAAGUCUUUGAGGUUUUUUGAGACUUUUGAGUCUCCAGAAAAACAAAAAAGAUCUUCACAGAUUUAUAAGCCUAUGUGAUCUCGGACCAGGCUUCAUUCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018992312.1
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:1215   UGGAAUGAAGCCUGGUCCGG   1234

1.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-15 (LOC109011208), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018992313.1
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:1837   UGGAAUGAAGCCUGGUCCGG   1856

1.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-15 (LOC109011208), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018989954.1
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||=|||||||||||||||=
targets:660   UGGGAUGAAGCCUGGUCCGG   679

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-8-like (LOC109009482), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018972556.1
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||=|||||||||||||||=
targets:902   UGGGAUGAAGCCUGGUCCGG   921

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-14-like (LOC108996578), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018972555.1
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||=|||||||||||||||=
targets:1002   UGGGAUGAAGCCUGGUCCGG   1021

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-14-like (LOC108996578), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018989955.1
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||=|||||||||||||||=
targets:967   UGGGAUGAAGCCUGGUCCGG   986

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-8-like (LOC109009482), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018992318.1
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||=|||||||||||||||=
targets:1076   UGGGAUGAAGCCUGGUCCGG   1095

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-14-like (LOC109011210), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018950208.1
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||=|||||||||||||||=
targets:1020   UGGGAUGAAGCCUGGUCCGG   1039

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-15-like (LOC108979516), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018950207.1
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||=|||||||||||||||=
targets:1025   UGGGAUGAAGCCUGGUCCGG   1044

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-15-like (LOC108979516), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018992317.1
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||=|||||||||||||||=
targets:1169   UGGGAUGAAGCCUGGUCCGG   1188

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-14-like (LOC109011210), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018963984.1
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||=|||||||||||||||=
targets:1350   UGGGAUGAAGCCUGGUCCGG   1369

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein REVOLUTA-like (LOC108990117), mRNA NA coding protein psRNATarget
XM_018953220.1
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||=|||||||||||||||=
targets:1418   UGGGAUGAAGCCUGGUCCGG   1437

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein REVOLUTA-like (LOC108981958), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018953221.1
ncRNA:20   CCCUUACUUCGGACCAGGCU   1
  *||=|||||||||||||||=
targets:1418   UGGGAUGAAGCCUGGUCCGG   1437

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein REVOLUTA-like (LOC108981958), transcript variant X2, mRNA NA coding protein psRNATarget
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