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BaseInfo

ncRNA ID novel_jre_miR206
Species Juglans regia
Class miRNA
Genome position NW_017443621.1:683781-683889 [+]
Reference genome wgs.5d
Source SRR1168887;SRR1170955;SRR1170960;SRR1170961;SRR1170962;SRR1170963;SRR1170964;SRR1170965;SRR1170966;SRR1170967;SRR1170968;SRR1168880;SRR1170969;SRR1170970;SRR1168881;SRR1168883;SRR1168884;SRR1168886
Length 22
Mature sequence(if miRNA) 1 - UCCAAAGGGAUCGCAUUGAUCU - 22
Stem-loop(if miRNA) --   A            U    UG   UUCAUC  U  CC       UC  CG   G
  UCC AAGGGAUCGCAU GAUC  AUG      GA GC  AAAUGAG  CG  GCU C
  ||| |||||||||||| ||||  |||      || ||  |||||||  ||  ||| U
  AGG UUCCCUAGCGUA CUAG  UAC      CU CG  UUUACUU  GC  UGG U
GA   A            -    GU   ---UAA  -  -U       --  UU   U
Stem-loop sequence UCCAAAGGGAUCGCAUUGAUCUGAUGUUCAUCGAUGCCCAAAUGAGUCCGCGGCUGCUUUGGUUUCGUUCAUUUUGCUCAAUCAUUGGAUCAUGCGAUCCCUUAGGAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018964391.1
ncRNA:22   UCUAGUUACGCUAGGGAAACCU   1
  ***||||*|||||||||||||*
targets:200   UUCUCAAGGCGAUCCCUUUGGC   221

2.0 PREDICTED: Juglans regia antifungal protein ginkbilobin-2-like (LOC108990426), mRNA NA coding protein psRNATarget