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BaseInfo

ncRNA ID	novel_jre_miR204
Species	Juglans regia
Class	miRNA
Genome position	NW_017443621.1:1037515-1037666 [+]
Reference genome	wgs.5d
Source	SRR1168887;SRR1170962;SRR1170963;SRR1170965;SRR1168880;SRR1170970;SRR1168886
Length	24
Mature sequence(if miRNA)	129 - CUUGCGCACUCCACGACUGUAUGU - 152
Stem-loop(if miRNA)	--             A   AA        UG  A       AA          ---------- GU   C   U      UU   AUACAGUCGUGGA UGC  AAGUGUCG  CA UCGCUUU  AAAAGAGUGA          G  CUA UAU AAAAAA  A   ||||||||||||| |||  ||||||||  || |||||||  ||||||||||          |  ||| ||| ||||||   UAUGUCAGCACCU ACG  UUCGCGGC  GU AGUGAAA  UUUUUUUACU          C  GGU AUA UUUUUU  A UG             C   CG        GU  A       -C          UAUUUAUACC UG   -   C      UU
Stem-loop sequence	AUACAGUCGUGGAAUGCAAAAGUGUCGUGCAAUCGCUUUAAAAAAGAGUGAGGUCUACUAUUAAAAAAUUAAUUUUUUUUCAUAUGGGUCCCAUAUUUAUUCAUUUUUUUCAAAGUGAAUGUGCGGCGCUUGCGCACUCCACGACUGUAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018994468.1	ncRNA:24   UGUAUGUCAGCACCUCACGCGUUC   1   |||||||||||||||||||||||| targets:1431   ACAUACAGUCGUGGAGUGCGCAAG   1454 Target Full Sequence	0.0	PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC109012694), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018960739.1	ncRNA:24   UGUAUGUCAGCACCUCACGCGUUC   1   |||||||||||||||||*|||||| targets:1149   ACAUACAGUCGUGGAGUACGCAAG   1172 Target Full Sequence	1.5	PREDICTED: Juglans regia uncharacterized protein At1g28695-like (LOC108987746), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019003364.1	ncRNA:24   UGUAUGUCAGCACCUCACGCGUUC   1   |=||=||||=|||||||*|||||| targets:1478   AUAUGCAGUUGUGGAGUACGCAAG   1501 Target Full Sequence	2.5	PREDICTED: Juglans regia polygalacturonase-like (LOC109020835), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_019003363.1	ncRNA:24   UGUAUGUCAGCACCUCACGCGUUC   1   |=||=||||=|||||||*|||||| targets:1484   AUAUGCAGUUGUGGAGUACGCAAG   1507 Target Full Sequence	2.5	PREDICTED: Juglans regia polygalacturonase-like (LOC109020835), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019003362.1	ncRNA:24   UGUAUGUCAGCACCUCACGCGUUC   1   |=||=||||=|||||||*|||||| targets:1523   AUAUGCAGUUGUGGAGUACGCAAG   1546 Target Full Sequence	2.5	PREDICTED: Juglans regia polygalacturonase-like (LOC109020835), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018969255.1	ncRNA:24   UGUAUGUCAGCACCUCACGCGUUC   1   ||||||||||*||||||||||*|| targets:1893   ACAUACAGUCAUGGAGUGCGCCAG   1916 Target Full Sequence	2.5	PREDICTED: Juglans regia CTP synthase-like (LOC108994151), transcript variant X1, mRNA	NA	coding protein	psRNATarget