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BaseInfo

ncRNA ID novel_jre_miR187
Species Juglans regia
Class miRNA
Genome position NW_017443580.1:231131-231240 [+]
Reference genome wgs.5d
Source SRR1168887;SRR1170955;SRR1170964;SRR1170965;SRR1170970;SRR1168881;SRR1168883
Length 24
Mature sequence(if miRNA) 87 - UUUCAAAGUGAUUGCGCGGCGCUU - 110
Stem-loop(if miRNA) --            UG           A ---------U        UAUU        A
  GCGUUGUGCAGU  CUUUGAAAAAG G          GGGUCUAC    AAAAAAUU A
  ||||||||||||  ||||||||||| |          ||||||||    ||||||||
  CGCGGCGCGUUA  GAAACUUUUUC C          CCUAGGUG    UUUUUUAA U
UU            GU           A UUAUAUAUGU        -UUC        U
Stem-loop sequence GCGUUGUGCAGUUGCUUUGAAAAAGAGUGGGUCUACUAUUAAAAAAUUAAUUAAUUUUUUCUUGUGGAUCCUGUAUAUAUUCACUUUUUCAAAGUGAUUGCGCGGCGCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018987355.1
ncRNA:24   UUCGCGGCGCGUUAGUGAAACUUU   1
  ||*|||||||=||||=||||||||
targets:1848   AACCGCCGCGUAAUCGCUUUGAAA   1871

2.5 PREDICTED: Juglans regia 7-deoxyloganetin glucosyltransferase-like (LOC109007610), mRNA NA coding protein psRNATarget
XM_018953401.1
ncRNA:24   UUCGCGGCGCGUUAGUGAAACUUU   1
  ||*|||||||=||||=||||||||
targets:2311   AACCGCCGCGUAAUCGCUUUGAAA   2334

2.5 PREDICTED: Juglans regia receptor protein kinase CLAVATA1-like (LOC108982113), mRNA NA coding protein psRNATarget
XM_018994468.1
ncRNA:24   UUCGCGGCGCGUUAGUGAAACUUU   1
  |||=*|||=|||=|||||||||||
targets:1452   AAGUACCGUGCAGUCACUUUGAAA   1475

2.5 PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC109012694), transcript variant X6, mRNA NA coding protein psRNATarget