Search result

BaseInfo

ncRNA ID	novel_jre_miR184
Species	Juglans regia
Class	miRNA
Genome position	NW_017443565.1:911497-911652 [+]
Reference genome	wgs.5d
Source	SRR1168887;SRR1170956;SRR1170957;SRR1170960;SRR1170961;SRR1170962;SRR1170963;SRR1170964;SRR1170967;SRR1170968;SRR1170969;SRR1170970;SRR1168795;SRR1168881;SRR1168884;SRR1168886
Length	21
Mature sequence(if miRNA)	1 - UCGCUUGGUGCAGGUCGGGAA - 21
Stem-loop(if miRNA)	--   C          U     A  GC       ---G         UGCAAA    U    GAAU    U G  UC      U   UCG UUGGUGCAGG CGGGA CU  UUCGCUU    CCCUUUAUA      CAUA AUCG    ACCA U UU  UGCGCU A   ||| |||||||||| ||||| ||  |||||||    |||||||||      |||| ||||    |||| | ||  ||||||   AGU AACUACGUUC GCCCU GG  AAGCGGG    GGGAGGUGU      GUAU UGGU    UGGU A AG  AUGCGA G UA   C          C     A  UU       UAAA         ----UG    -    ----    U G  UU      U
Stem-loop sequence	UCGCUUGGUGCAGGUCGGGAACUGCUUCGCUUGCCCUUUAUAUGCAAACAUAUAUCGGAAUACCAUUGUUUCUGCGCUUAGUAGCGUAUUGAGAUUGGUUGGUUAUGGUUGUGGAGGGAAAUGGGCGAAUUGGAUCCCGCCUUGCAUCAACUGAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018967894.1	ncRNA:21   AAGGGCUGGACGUGGUUCGCU   1   |||||||*|||||||||||*| targets:561   UUCCCGAGCUGCACCAAGCAA   581 Target Full Sequence	2.5	PREDICTED: Juglans regia protein argonaute 1-like (LOC108993130), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018967892.1	ncRNA:21   AAGGGCUGGACGUGGUUCGCU   1   |||||||*|||||||||||*| targets:561   UUCCCGAGCUGCACCAAGCAA   581 Target Full Sequence	2.5	PREDICTED: Juglans regia protein argonaute 1-like (LOC108993130), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018967893.1	ncRNA:21   AAGGGCUGGACGUGGUUCGCU   1   |||||||*|||||||||||*| targets:573   UUCCCGAGCUGCACCAAGCAA   593 Target Full Sequence	2.5	PREDICTED: Juglans regia protein argonaute 1-like (LOC108993130), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018967890.1	ncRNA:21   AAGGGCUGGACGUGGUUCGCU   1   |||||||*|||||||||||*| targets:526   UUCCCGAACUGCACCAAGCAA   546 Target Full Sequence	2.5	PREDICTED: Juglans regia protein argonaute 1-like (LOC108993129), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018953131.1	ncRNA:21   AAGGGCUGGACGUGGUUCGCU   1   *||||||*|||||||||||*| targets:397   AUCCCGAGCUGCACCAAGCAA   417 Target Full Sequence	2.5	PREDICTED: Juglans regia protein argonaute 1-like (LOC108981885), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018953130.1	ncRNA:21   AAGGGCUGGACGUGGUUCGCU   1   *||||||*|||||||||||*| targets:493   AUCCCGAGCUGCACCAAGCAA   513 Target Full Sequence	2.5	PREDICTED: Juglans regia protein argonaute 1-like (LOC108981885), transcript variant X1, mRNA	NA	coding protein	psRNATarget