Search result

BaseInfo

ncRNA ID	novel_jre_miR181
Species	Juglans regia
Class	miRNA
Genome position	NW_017443553.1:688060-688151 [-]
Reference genome	wgs.5d
Source	SRR1168887;SRR1170955;SRR1170956;SRR1168796;SRR1170957;SRR1170970;SRR1168881;SRR1168884;SRR1168886
Length	24
Mature sequence(if miRNA)	1 - UUUCAAAGUGAUUGCACGGUACUU - 24
Stem-loop(if miRNA)	-- CG       U       -          AAUAAAUAC  AAUCUACA   G  UCGUGCA UCACUUU AAAAAAAGUG         UG        U   |  ||||||| ||||||| ||||||||||         ||   C  GGCACGU AGUGAAA UUUUUUUCAC         CU        G UU AU       U       C          -------CU  UAAAAAAA
Stem-loop sequence	GCGUCGUGCAUUCACUUUAAAAAAAGUGAAUAAAUACUGAAUCUACAUGAAAAAAAUUCUCCACUUUUUUUCAAAGUGAUUGCACGGUACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018994468.1	ncRNA:24   UUCAUGGCACGUUAGUGAAACUUU   1   ||||||||||||=||||||||||| targets:1452   AAGUACCGUGCAGUCACUUUGAAA   1475 Target Full Sequence	1.5	PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC109012694), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018952930.1	ncRNA:24   UUCAUGGCACGUUAGUGAAACUUU   1   |||*=||*||||=||||||||||| targets:3183   AAGCGCCUUGCAGUCACUUUGAAA   3206 Target Full Sequence	2.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018952929.1	ncRNA:24   UUCAUGGCACGUUAGUGAAACUUU   1   |||*=||*||||=||||||||||| targets:3186   AAGCGCCUUGCAGUCACUUUGAAA   3209 Target Full Sequence	2.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X1, mRNA	NA	coding protein	psRNATarget