| ncRNA ID | ath-miR172d-5p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr3:20587904-20588027 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 18 - GCAACAUCUUCAAGAUUCAGA - 38 |
| Stem-loop(if miRNA) |
-GU UA A U AG UUCUCU U UC AGUCAUU UUGC UUGCA CAUC UCAAGAUUC AAAUCAGA UA GGGUUU U ||||||| |||| ||||| |||| ||||||||| |||||||| || |||||| UCGGUAA AACG GACGU GUAG AGUUCUAAG UUUGGUUU AU UCCGAG U AUU GC C U AG ---UUU U UU |
| Stem-loop sequence | AGUCAUUGUUUGCUAUUGCAACAUCUUCAAGAUUCAGAAAUCAGAUUCUCUUAUGGGUUUUCUUUUGAGCCUUUAUUUUUUGGUUUGAGAAUCUUGAUGAUGCUGCAGCGGCAAUUAAAUGGCU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_001332137.1 |
|
2.0 | Arabidopsis thaliana semialdehyde dehydrogenase family protein partial mRNA | semialdehyde dehydrogenase family protein(AT1G14810) | coding protein | psRNATarget | |||||||||
| NM_101350.4 |
|
2.0 | Arabidopsis thaliana semialdehyde dehydrogenase family protein mRNA | semialdehyde dehydrogenase family protein(AT1G14810) | coding protein | psRNATarget | |||||||||
| AK222051.1 |
|
3.0 | Arabidopsis thaliana mRNA for beta-glucosidase, complete cds, clone: RAFL22-78-E01 | NA | coding protein | psRNATarget | |||||||||
| AF183827.1 |
|
3.0 | Arabidopsis thaliana beta-glucosidase homolog (BG1) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| AY056415.1 |
|
3.0 | Arabidopsis thaliana At1g52400/F19K6_15 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| BT000657.1 |
|
3.0 | Arabidopsis thaliana clone RAFL06-67-J02 (R11442) putative beta-glucosidase (At1g52400) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| AY039855.1 |
|
3.0 | Arabidopsis thaliana At1g52400/F19K6_15 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_001036098.2 |
|
3.0 | Arabidopsis thaliana beta glucosidase 18 (BGLU18), mRNA | beta glucosidase 18(BGLU18) | coding protein | psRNATarget | |||||||||
| NM_104118.3 |
|
3.0 | Arabidopsis thaliana beta glucosidase 18 (BGLU18), mRNA | beta glucosidase 18(BGLU18) | coding protein | psRNATarget |
| 1 | PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004). |
| 2 | PMID:16040653
"Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005). |
| 3 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
| 4 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 5 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |