ncRNA ID | novel_jre_miR132 |
Species | Juglans regia |
Class | miRNA |
Genome position | NW_017441965.1:10485-10600 [+] |
Reference genome | wgs.5d |
Source | SRR1168887 |
Length | 24 |
Mature sequence(if miRNA) | 1 - CGCUGCGUAAUCGUUUUGAAAAAG - 24 |
Stem-loop(if miRNA) |
C    ---C                   ----------     GU    UAU      -AU   U  GCUG    GUAAUCGUUUUGAAAAAGA          GUGGG  CUAC   UAAAAA   UAU A  ||||    |||||||||||||||||||          |||||  ||||   ||||||   ||| U  UGAU    CAUUAGCGAAACUUUUUUU          UACUC  GGUG   AUUUUU   AUG U -    AGCC                   ACUUAUUUUG     UG    --U      AUU   A |
Stem-loop sequence | CGCUGCGUAAUCGUUUUGAAAAAGAGUGGGGUCUACUAUUAAAAAAUUAUUAUUAGUAUUAUUUUUAUGUGGGUCUCAUGUUUUAUUCAUUUUUUUCAAAGCGAUUACCCGAUAGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_018994005.1 |
|
2.5 | PREDICTED: Juglans regia dnAJ-like protein slr0093 (LOC109012397), transcript variant X3, mRNA | NA | coding protein | psRNATarget | |||||||||
XM_018994004.1 |
|
2.5 | PREDICTED: Juglans regia dnAJ-like protein slr0093 (LOC109012397), transcript variant X2, mRNA | NA | coding protein | psRNATarget |