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BaseInfo

ncRNA ID novel_jre_miR132
Species Juglans regia
Class miRNA
Genome position NW_017441965.1:10485-10600 [+]
Reference genome wgs.5d
Source SRR1168887
Length 24
Mature sequence(if miRNA) 1 - CGCUGCGUAAUCGUUUUGAAAAAG - 24
Stem-loop(if miRNA) C    ---C                   ----------     GU    UAU      -AU   U
 GCUG    GUAAUCGUUUUGAAAAAGA          GUGGG  CUAC   UAAAAA   UAU A
 ||||    |||||||||||||||||||          |||||  ||||   ||||||   ||| U
 UGAU    CAUUAGCGAAACUUUUUUU          UACUC  GGUG   AUUUUU   AUG U
-    AGCC                   ACUUAUUUUG     UG    --U      AUU   A
Stem-loop sequence CGCUGCGUAAUCGUUUUGAAAAAGAGUGGGGUCUACUAUUAAAAAAUUAUUAUUAGUAUUAUUUUUAUGUGGGUCUCAUGUUUUAUUCAUUUUUUUCAAAGCGAUUACCCGAUAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018994005.1
ncRNA:24   GAAAAAGUUUUGCUAAUGCGUCGC   1
  =|||||||||||||||||||||=*
targets:1087   UUUUUUCAAAACGAUUACGCAGUA   1110

2.5 PREDICTED: Juglans regia dnAJ-like protein slr0093 (LOC109012397), transcript variant X3, mRNA NA coding protein psRNATarget
XM_018994004.1
ncRNA:24   GAAAAAGUUUUGCUAAUGCGUCGC   1
  =|||||||||||||||||||||=*
targets:1409   UUUUUUCAAAACGAUUACGCAGUA   1432

2.5 PREDICTED: Juglans regia dnAJ-like protein slr0093 (LOC109012397), transcript variant X2, mRNA NA coding protein psRNATarget