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BaseInfo

ncRNA ID novel_jre_miR129
Species Juglans regia
Class miRNA
Genome position NW_017388884.1:832925-833010 [+]
Reference genome wgs.5d
Source SRR1168887;SRR1168796;SRR1170955;SRR1170956;SRR1170957;SRR1170958;SRR1170959;SRR1170960;SRR1170961;SRR1170962;SRR1170963;SRR1170964;SRR1168880;SRR1170965;SRR1170966;SRR1170967;SRR1170968;SRR1170969;SRR1170970;SRR1168881;SRR1168795;SRR1168883;SRR1168884;SRR1168886
Length 21
Mature sequence(if miRNA) 66 - UCGGACCAGGCUUCAUUCCCC - 86
Stem-loop(if miRNA) --      UU G    CU         CACAU    G     CAU
  GGAAUG  G CUGG  CGAGGCUUU     GGAG UUCUU   G
  ||||||  | ||||  |||||||||     |||| |||||
  CCUUAC  C GACC  GCUUCGGAG     UCUC AGGAA   U
CC      UU G    AG         ----U    A     AAA
Stem-loop sequence GGAAUGUUGGCUGGCUCGAGGCUUUCACAUGGAGGUUCUUCAUGUAAAAAGGAACUCUUGAGGCUUCGGACCAGGCUUCAUUCCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018992312.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||||||||||||||||||=
targets:1214   CUGGAAUGAAGCCUGGUCCGG   1234

1.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-15 (LOC109011208), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018992313.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||||||||||||||||||=
targets:1836   CUGGAAUGAAGCCUGGUCCGG   1856

1.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-15 (LOC109011208), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018989954.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:659   CUGGGAUGAAGCCUGGUCCGG   679

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-8-like (LOC109009482), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018972556.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:901   UUGGGAUGAAGCCUGGUCCGG   921

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-14-like (LOC108996578), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018972555.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1001   UUGGGAUGAAGCCUGGUCCGG   1021

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-14-like (LOC108996578), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018989955.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:966   CUGGGAUGAAGCCUGGUCCGG   986

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-8-like (LOC109009482), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018992318.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1075   UUGGGAUGAAGCCUGGUCCGG   1095

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-14-like (LOC109011210), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018950208.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1019   CUGGGAUGAAGCCUGGUCCGG   1039

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-15-like (LOC108979516), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018950207.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1024   CUGGGAUGAAGCCUGGUCCGG   1044

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-15-like (LOC108979516), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018992317.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1168   UUGGGAUGAAGCCUGGUCCGG   1188

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein ATHB-14-like (LOC109011210), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018963984.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1349   CUGGGAUGAAGCCUGGUCCGG   1369

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein REVOLUTA-like (LOC108990117), mRNA NA coding protein psRNATarget
XM_018953220.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1417   CUGGGAUGAAGCCUGGUCCGG   1437

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein REVOLUTA-like (LOC108981958), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018953221.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1417   CUGGGAUGAAGCCUGGUCCGG   1437

2.0 PREDICTED: Juglans regia homeobox-leucine zipper protein REVOLUTA-like (LOC108981958), transcript variant X2, mRNA NA coding protein psRNATarget
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